Summary of 179-Kobachi-BLVRAactivity


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Title
Fluorescence images of biliverdin reductase-A (BLVRA) activity in WT or BLVRA KO mice or HeLa cells.
Description
-
Release date
2022-03-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
89 ( Image datasets: 89, Quantitative data datasets: 0 )
Size of Datasets
2.0 GB ( Image datasets: 2.0 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens, Mus musculus
Strain(s)
MEFs
Cell lines(s)
HeLa cell
Gene symbol(s)
Bivra, NuCyM
Protein tag(s)
mCherry
Reporter(s)
NIR-GECO1

Datatype
-
Molecular Function (MF)
biliverdin reductase
Biological Process (BP)
-
Cellular Component (CC)
NA, cytoplasm
Biological Imaging Method
confocal microscopy, fluorescence microscopy
X scale
0.621 micrometer/pixel, 0.248 micrometer/pixel, 1.242 micrometer/pixel, 0.994 micrometer/pixel
Y scale
0.621 micrometer/pixel, 0.248 micrometer/pixel, 1.242 micrometer/pixel, 0.994 micrometer/pixel
Z scale
1 micrometer/slice, 2 micrometer/slice, 3 micrometer/slice
T scale
31 sec per time interval, 27 sec per time interval, 144 sec per time interval, 30 sec per time interval, 22 sec per time interval, 120 sec per time interval, 145 sec per time interval, 143 sec per time interval, 23 sec per time interval, 28 sec per time interval, 26 sec per time interval, 1 sec per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Kenju Kobachi, Sota Kuno, Shinya Sato, Kenta Sumiyama, Michiyuki Matsuda, Kenta Terai (2020) Biliverdin Reductase-A Deficiency Brighten and Sensitize Biliverdin-binding Chromoproteins., Cell structure and function, Volume 45, Number 2, pp. 131-141

Published in 2020 Aug 21 (Electronic publication in June 25, 2020, midnight )

(Abstract) Tissue absorbance, light scattering, and autofluorescence are significantly lower in the near-infrared (NIR) range than in the visible range. Because of these advantages, NIR fluorescent proteins (FPs) are in high demand for in vivo imaging. Nevertheless, application of NIR FPs such as iRFP is still limited due to their dimness in mammalian cells. In contrast to GFP and its variants, iRFP requires biliverdin (BV) as a chromophore. The dimness of iRFP is at least partly due to rapid reduction of BV by biliverdin reductase-A (BLVRA). Here, we established biliverdin reductase-a knockout (Blvra(-/-)) mice to increase the intracellular BV concentration and, thereby, to enhance iRFP fluorescence intensity. As anticipated, iRFP fluorescence intensity was significantly increased in all examined tissues of Blvra(-/-) mice. Similarly, the genetically encoded calcium indicator NIR-GECO1, which is engineered based on another NIR FP, mIFP, exhibited a marked increase in fluorescence intensity in mouse embryonic fibroblasts derived from Blvra(-/-) mice. We expanded this approach to an NIR light-sensing optogenetic tool, the BphP1-PpsR2 system, which also requires BV as a chromophore. Again, deletion of the Blvra gene markedly enhanced the light response in HeLa cells. These results indicate that the Blvra(-/-) mouse is a versatile tool for the in vivo application of NIR FPs and NIR light-sensing optogenetic tools.Key words: in vivo imaging, near-infrared fluorescent protein, biliverdin, biliverdin reductase, optogenetic tool.
(MeSH Terms)

Contact
Kenta Terai , Graduate School of Medicine, Kyoto University , Department of Pathology and Biology of Diseases
Contributors

Dataset List of 179-Kobachi-BLVRAactivity

Thumbnail
#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Earskin_mouse1_1
# 7122
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Earskin_mouse1_2
# 7123
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Earskin_mouse2_1
# 7124
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Earskin_mouse2_2
# 7125
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Earskin_mouse2_3
# 7126
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Earskin_mouse3_1
# 7127
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Earskin_mouse3_2
# 7128
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Earskin_mouse3_3
# 7129
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Kidney_mouse1_1
# 7130
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Kidney_mouse1_2
# 7131
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Kidney_mouse2_1
# 7132
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Kidney_mouse2_2
# 7133
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Kidney_mouse3_1
# 7134
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Kidney_mouse3_2
# 7135
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Kidney_mouse4_1
# 7136
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Kidney_mouse4_2
# 7137
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Liver_mouse1_1
# 7138
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Liver_mouse1_2
# 7139
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Liver_mouse2_1
# 7140
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Liver_mouse2_2
# 7141
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Liver_mouse3_1
# 7142
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Liver_mouse3_2
# 7143
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Liver_mouse4_1
# 7144
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Liver_mouse4_2
# 7145
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Pancreas_mouse1
# 7146
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Pancreas_mouse2_1
# 7147
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Pancreas_mouse2_2
# 7148
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Pancreas_mouse2_3
# 7149
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Pancreas_mouse3_1
# 7150
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Pancreas_mouse3_2
# 7151
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Pancreas_mouse3_3
# 7152
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_BlvraKO_Pancreas_mouse3_4
# 7153
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Earskin_mouse1_1
# 7154
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Earskin_mouse1_2
# 7155
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Earskin_mouse2_1
# 7156
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Earskin_mouse2_2
# 7157
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Earskin_mouse3_1
# 7158
Dataset Kind Image data
Dataset Size 21.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Earskin_mouse3_2
# 7159
Dataset Kind Image data
Dataset Size 19.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Earskin_mouse4_1
# 7160
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Earskin_mouse4_2
# 7161
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Earskin_mouse4_3
# 7162
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Kidney_mouse1_1
# 7163
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Kidney_mouse1_2
# 7164
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Kidney_mouse2_1
# 7165
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Kidney_mouse2_2
# 7166
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Kidney_mouse3_1
# 7167
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Kidney_mouse3_2
# 7168
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Kidney_mouse4_1
# 7169
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Kidney_mouse4_2
# 7170
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_WT_Liver_mouse1_1
# 7171
Dataset Kind Image data
Dataset Size 13.9 MB
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SSBD:OMERO
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