Summary of 177-Kinjo-cAMPsignalingDyn

SSBD:database
SSBD:database URL
Title
Fluorescence images of the cAMP-Signaling Pathway in 3D Tissues with FRET-Assisted Two-Photon Activation of bPAC.
Description
-
Relase date
2022-03-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
112 ( Image datasets: 112, Quantitative data datasets: 0 )
Size of Datasets
4.3 GB ( Image datasets: 4.3 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus, Canis lupus familiaris, Homo sapiens
Cell lines(s)
HeLa cell, MDCK cell
Protein name(s)
TFP1

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
cAMP-mediated signaling
Cellular Component (CC)
cAMP-dependent protein kinase complex
Biological Imaging Method
differences in fluorescence lifetime, FRET, time lapse microscopy
X scale
0.662 micrometer/pixel, NA, 0.497 micrometer/pixel, 0.828 micrometer/pixel, 0.795 micrometer/pixel
Y scale
0.662 micrometer/pixel, NA, 0.497 micrometer/pixel, 0.828 micrometer/pixel, 0.795 micrometer/pixel
Z scale
2 micrometer/pixel, 1 micrometer/pixel, NA
T scale
10.06 sec per time interval, 20 sec per time interval, 10.08 sec per time interval, NA, 10.03 sec per time interval, 305 sec per time interval, 30 sec per time interval, 10.07 sec per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Tomoaki Kinjo, Tetsuya Watabe, Kenju Kobachi, Kenta Terai, Michiyuki Matsuda (2020) Single-Cell Activation of the cAMP-Signaling Pathway in 3D Tissues with FRET-Assisted Two-Photon Activation of bPAC., ACS chemical biology, Volume 15, Number 11, pp. 2848-2853

Published in 2020 Nov 20 (Electronic publication in Oct. 19, 2020, midnight )

(Abstract) Bacterial photoactivated adenylyl cyclase (bPAC) has been widely used in signal transduction research. However, due to its low two-photon absorption, bPAC cannot be efficiently activated by two-photon (2P) excitation. Taking advantage of the high two-photon absorption of monomeric teal fluorescent protein 1 (mTFP1), we herein developed 2P-activatable bPAC (2pabPAC), a fusion protein consisting of bPAC and mTFP1. In 2pabPAC, the energy absorbed by mTFP1 excites bPAC by Furster resonance energy transfer (FRET) at ca. 43% efficiency. The light-induced increase in cAMP was monitored by a red-shifted FRET biosensor for PKA. In 3D MDCK cells and mouse liver, PKA was activated at single-cell resolution under a 2P microscope. We found that PKA activation in a single hepatocyte caused PKA activation in neighboring cells, indicating the propagation of PKA activation. Thus, 2pabPAC will provide a versatile platform for controlling the cAMP signaling pathway and investigating cell-to-cell communication in vivo.
(MeSH Terms)

Contact
Kenta Terai , Graduate School of Medicine, Kyoto University , Department of Pathology and Biology of Diseases
Contributors


Dataset List of 177-Kinjo-cAMPsignalingDyn

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 6850
Dataset Kind Image data
Dataset Size 497.5 KB
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# 6851
Dataset Kind Image data
Dataset Size 497.5 KB
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# 6852
Dataset Kind Image data
Dataset Size 21.6 MB
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# 6853
Dataset Kind Image data
Dataset Size 62.6 MB
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# 6854
Dataset Kind Image data
Dataset Size 23.7 MB
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# 6855
Dataset Kind Image data
Dataset Size 21.6 MB
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SSBD:OMERO
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# 6856
Dataset Kind Image data
Dataset Size 62.6 MB
4D view
SSBD:OMERO
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# 6857
Dataset Kind Image data
Dataset Size 23.7 MB
4D view
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# 6858
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6859
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6860
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6861
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6862
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6863
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6864
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6865
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6866
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6867
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6868
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6869
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6870
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6871
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6872
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6873
Dataset Kind Image data
Dataset Size 57.9 MB
4D view
SSBD:OMERO
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# 6874
Dataset Kind Image data
Dataset Size 29.3 MB
4D view
SSBD:OMERO
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# 6875
Dataset Kind Image data
Dataset Size 14.9 MB
4D view
SSBD:OMERO
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# 6876
Dataset Kind Image data
Dataset Size 57.9 MB
4D view
SSBD:OMERO
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# 6877
Dataset Kind Image data
Dataset Size 29.3 MB
4D view
SSBD:OMERO
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# 6878
Dataset Kind Image data
Dataset Size 14.9 MB
4D view
SSBD:OMERO
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# 6879
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6880
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6881
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6882
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6883
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6884
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6885
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6886
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6887
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6888
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6889
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6890
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6891
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6892
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6893
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6894
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6895
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6896
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6897
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6898
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6899
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6900
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6901
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6902
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6903
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6904
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6905
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6906
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6907
Dataset Kind Image data
Dataset Size 31.0 MB
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SSBD:OMERO
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# 6908
Dataset Kind Image data
Dataset Size 15.8 MB
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# 6909
Dataset Kind Image data
Dataset Size 61.4 MB
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SSBD:OMERO
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# 6910
Dataset Kind Image data
Dataset Size 31.0 MB
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SSBD:OMERO
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# 6911
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6912
Dataset Kind Image data
Dataset Size 61.4 MB
4D view
SSBD:OMERO
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# 6913
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 6914
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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# 6915
Dataset Kind Image data
Dataset Size 21.0 MB
4D view
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# 6916
Dataset Kind Image data
Dataset Size 21.0 MB
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SSBD:OMERO
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# 6917
Dataset Kind Image data
Dataset Size 21.0 MB
4D view
SSBD:OMERO
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# 6918
Dataset Kind Image data
Dataset Size 44.2 MB
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# 6919
Dataset Kind Image data
Dataset Size 44.2 MB
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# 6920
Dataset Kind Image data
Dataset Size 44.2 MB
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# 6921
Dataset Kind Image data
Dataset Size 44.2 MB
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# 6922
Dataset Kind Image data
Dataset Size 44.2 MB
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# 6923
Dataset Kind Image data
Dataset Size 44.2 MB
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# 6924
Dataset Kind Image data
Dataset Size 44.2 MB
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# 6925
Dataset Kind Image data
Dataset Size 44.2 MB
4D view
SSBD:OMERO
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# 6926
Dataset Kind Image data
Dataset Size 44.5 MB
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SSBD:OMERO
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# 6927
Dataset Kind Image data
Dataset Size 44.2 MB
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# 6928
Dataset Kind Image data
Dataset Size 44.2 MB
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# 6929
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6930
Dataset Kind Image data
Dataset Size 66.3 MB
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SSBD:OMERO
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# 6931
Dataset Kind Image data
Dataset Size 66.3 MB
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# 6932
Dataset Kind Image data
Dataset Size 44.2 MB
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# 6933
Dataset Kind Image data
Dataset Size 44.2 MB
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# 6934
Dataset Kind Image data
Dataset Size 44.2 MB
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# 6935
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6936
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6937
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6938
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6939
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6940
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6941
Dataset Kind Image data
Dataset Size 44.2 MB
4D view
SSBD:OMERO
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# 6942
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6943
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6944
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6945
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6946
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6947
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6948
Dataset Kind Image data
Dataset Size 66.3 MB
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SSBD:OMERO
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# 6949
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6950
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6951
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6952
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6953
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6954
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6955
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6956
Dataset Kind Image data
Dataset Size 44.2 MB
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SSBD:OMERO
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# 6957
Dataset Kind Image data
Dataset Size 52.5 MB
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# 6958
Dataset Kind Image data
Dataset Size 52.5 MB
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# 6959
Dataset Kind Image data
Dataset Size 52.5 MB
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SSBD:OMERO
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# 6960
Dataset Kind Image data
Dataset Size 52.5 MB
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# 6961
Dataset Kind Image data
Dataset Size 52.5 MB
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