Summary of 163-Wang-MitochondrialDyn

SSBD:database
SSBD:database URL
Title
Time-lapse STED imaging of mitochondrial dynamics in MitoPB Yellow-labeled cells
Description
-
Relase date
2022-11-23
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
10 ( Image datasets: 10, Quantitative data datasets: 0 )
Size of Datasets
388.7 MB ( Image datasets: 388.7 MB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens
Cell lines(s)
HeLa cell
Reporter(s)
MitoPB Yellow

Datatype
-
Molecular Function (MF)
Biological Process (BP)
mitochondrial fusion
Cellular Component (CC)
mitochondrial crista, mitochondrial outer membrane, mitochondrial inner membrane, mitochondrion, mitochondrial membrane
Biological Imaging Method
Stimulation emission depletion, time lapse microscopy
X scale
0.0162337 micrometer/pixel, 0.0227272 micrometer/pixel, 0.0142045 micrometer/pixel, 0.0122189 micrometer/pixel
Y scale
0.0162337 micrometer/pixel, 0.0227272 micrometer/pixel, 0.0142045 micrometer/pixel, 0.0122189 micrometer/pixel
Z scale
1 micrometer/slice
T scale
1.31 sec per time interval, NA

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Chenguang Wang, Masayasu Taki, Yoshikatsu Sato, Yasushi Tamura, Hideyuki Yaginuma, Yasushi Okada, Shigehiro Yamaguchi (2019) A photostable fluorescent marker for the superresolution live imaging of the dynamic structure of the mitochondrial cristae., Proceedings of the National Academy of Sciences of the United States of America, Volume 116, Number 32, pp. 15817-15822

Published in 2019 Aug 6 (Electronic publication in July 23, 2019, midnight )

(Abstract) Stimulation emission depletion (STED) microscopy enables ultrastructural imaging of organelle dynamics with a high spatiotemporal resolution in living cells. For the visualization of the mitochondrial membrane dynamics in STED microscopy, rationally designed mitochondrial fluorescent markers with enhanced photostability are required. Herein, we report the development of a superphotostable fluorescent labeling reagent with long fluorescence lifetime, whose design is based on a structurally reinforced naphthophosphole fluorophore that is conjugated with an electron-donating diphenylamino group. The combination of long-lived fluorescence and superphotostable features of the fluorophore allowed us to selectively capture the ultrastructures of the mitochondrial cristae with a resolution of approximately 60 nm when depleted at 660 nm. This chemical tool provides morphological information of the cristae, which has so far only been observed in fixed cells using electron microscopy. Moreover, this method gives information about the dynamic ultrastructures such as the intermembrane fusion in different mitochondria as well as the intercristae mergence in a single mitochondrion during the apoptosis-like mitochondrial swelling process.
(MeSH Terms)

Contact
Taki Masayasu, Yasushi Okada, Shigehiro Yamaguchi , Nagoya University, RIKEN, Nagoya University , Institute of Transformative Bio-Molecules, Center for Biosystems Dynamics Research , Institute of Transformative Bio-Molecules , Functional Organic Materials Laboratory, Laboratory for Cell Polarity Regulation , Functional Organic Materials Laboratory
Contributors


Dataset List of 163-Wang-MitochondrialDyn

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
# 7673
Dataset Kind Image data
Dataset Size 180.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7674
Dataset Kind Image data
Dataset Size 200.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7675
Dataset Kind Image data
Dataset Size 904.8 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7676
Dataset Kind Image data
Dataset Size 904.8 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7677
Dataset Kind Image data
Dataset Size 904.7 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7678
Dataset Kind Image data
Dataset Size 1.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7679
Dataset Kind Image data
Dataset Size 904.8 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7680
Dataset Kind Image data
Dataset Size 904.7 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7681
Dataset Kind Image data
Dataset Size 904.7 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7682
Dataset Kind Image data
Dataset Size 904.7 KB
4D view
SSBD:OMERO
Download BDML
Download Image data