Summary of 111-Kawaguchi-NPCellsDyn
Title
Time-lapse and fluorescent images of collectice dynamics of neural progenitor cells (NPCs)
Kind
Quantitative data, Image data
based on Experiment
Number of Datasets
32
( Image datasets: 30,
Quantitative data datasets: 2 )
Size of Datasets
15.7 GB
( Image datasets: 15.7 GB,
Quantitative data datasets: 12.3 MB )
Biological Process (BP)
interkinetic nuclear migration
Cellular Component (CC)
nucleus
Biological Imaging Method
-
XYZ Scale
XY: 0.33 micrometer/pixel, Z: a.u., XY: 0.65 micrometer/pixel, Z: a.u., XY: 0.92 micrometer/pixel, Z: a.u., XY: 0.94 micrometer/pixel, Z: a.u.
T scale
NA, 5 minutes for each time interval
Image Acquisition
Experiment type
Immunofluorescence, Other, TimeLapse
Microscope type
FluorescenceMicroscope
Acquisition mode
Other
Contrast method
NA, Fluorescence, Phase
Microscope model
Leica AF7000, Nikon Eclipse Ti-E, Leica AF6000
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Kyogo Kawaguchi, Ryoichiro Kageyama, Masaki Sano (2017) Topological defects control collective dynamics in neural progenitor cell cultures., Nature, Volume 545, Number 7654, pp. 327-331
Published in 2017 Apr 12
(Electronic publication in April 12, 2017, midnight )
(Abstract) Cultured stem cells have become a standard platform not only for regenerative medicine and developmental biology but also for biophysical studies. Yet, the characterization of cultured stem cells at the level of morphology and of the macroscopic patterns resulting from cell-to-cell interactions remains largely qualitative. Here we report on the collective dynamics of cultured murine neural progenitor cells (NPCs), which are multipotent stem cells that give rise to cells in the central nervous system. At low densities, NPCs moved randomly in an amoeba-like fashion. However, NPCs at high density elongated and aligned their shapes with one another, gliding at relatively high velocities. Although the direction of motion of individual cells reversed stochastically along the axes of alignment, the cells were capable of forming an aligned pattern up to length scales similar to that of the migratory stream observed in the adult brain. The two-dimensional order of alignment within the culture showed a liquid-crystalline pattern containing interspersed topological defects with winding numbers of +1/2 and -1/2 (half-integer due to the nematic feature that arises from the head-tail symmetry of cell-to-cell interaction). We identified rapid cell accumulation at +1/2 defects and the formation of three-dimensional mounds. Imaging at the single-cell level around the defects allowed us to quantify the velocity field and the evolving cell density; cells not only concentrate at +1/2 defects, but also escape from -1/2 defects. We propose a generic mechanism for the instability in cell density around the defects that arises from the interplay between the anisotropic friction and the active force field.
Contact
Kyogo Kawaguchi
, RIKEN
, Center for Biosystems Dynamics Research
, Nonequilibrium physics of living matter RIKEN Hakubi Research Team
Contributors
Kyogo Kawaguchi, Ryoichiro Kageyama, Masaki Sano
SSBD:OMERO.gallery Project
SSBD:OMERO Project
Dataset List of 111-Kawaguchi-NPCellsDyn
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Dataset Kind
Image data
Dataset Size
795.4 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (362.1 MB)
Dataset Kind
Image data
Dataset Size
795.4 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (556.7 MB)
Dataset Kind
Image data
Dataset Size
225.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (159.5 MB)
Dataset Kind
Image data
Dataset Size
225.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (159.9 MB)
Dataset Kind
Image data
Dataset Size
150.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (112.9 MB)
Dataset Kind
Image data
Dataset Size
225.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (98.6 MB)
Dataset Kind
Image data
Dataset Size
225.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (95.0 MB)
Dataset Kind
Image data
Dataset Size
3.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (2.2 MB)
Dataset Kind
Image data
Dataset Size
11.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (9.2 MB)
Dataset Kind
Image data
Dataset Size
8.0 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (5.1 MB)
Dataset Kind
Image data
Dataset Size
4.0 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (2.2 MB)
Dataset Kind
Image data
Dataset Size
2.0 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.4 MB)
Dataset Kind
Image data
Dataset Size
4.0 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (2.4 MB)
Dataset Kind
Image data
Dataset Size
800.6 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (623.8 KB)
Dataset Kind
Image data
Dataset Size
800.6 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (630.0 KB)
Dataset Kind
Image data
Dataset Size
620.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (310.1 MB)
Dataset Kind
Image data
Dataset Size
620.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (365.3 MB)
Dataset Kind
Image data
Dataset Size
3.5 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (2.5 GB)
Dataset Kind
Image data
Dataset Size
3.5 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.4 GB)
Dataset Kind
Image data
Dataset Size
708.0 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (246.5 MB)
Dataset Kind
Image data
Dataset Size
542.5 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (370.2 MB)
Dataset Kind
Image data
Dataset Size
542.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (301.7 MB)
Dataset Kind
Image data
Dataset Size
339.5 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (225.6 MB)
Dataset Kind
Image data
Dataset Size
339.5 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (220.2 MB)
Dataset Kind
Image data
Dataset Size
795.4 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (471.0 MB)
Dataset Kind
Image data
Dataset Size
795.4 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (370.2 MB)
Dataset Kind
Image data
Dataset Size
225.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (159.9 MB)
Dataset Kind
Image data
Dataset Size
225.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (98.6 MB)
Dataset Kind
Image data
Dataset Size
225.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (158.2 MB)
Dataset Kind
Image data
Dataset Size
225.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (97.2 MB)
Dataset Kind
Quantitative data
Dataset Size
4.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip (459.6 KB)
Download Image data
zip (90.3 KB)
Dataset Kind
Quantitative data
Dataset Size
8.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip (1.1 MB)
Download Image data
zip (207.8 KB)