408-Sarper-TentacleArrange

Project

Title
Z-series and time-lapse images showing phyllotaxis-like periodic and symmetric tentacle arrangements
Description
Periodic organ arrangements occur during growth and development and are widespread in both animals and plants. In bilaterian animals, repetitive organs are typically arranged periodically in a two-dimensional space defined by two body axes. In contrast, radially symmetrical animals and plants exhibit organ arrangements in three-dimensional space—around the body axis in animals and around the stem in plants. While the principles of periodic organ arrangement have been extensively studied in bilaterians, investigations in radially symmetrical animals remain limited. In the present study, the authors combined live imaging, quantitative analysis, and mathematical modeling to elucidate periodic organ arrangement in a radially symmetrical animal, Coryne uchidai (Cnidaria, Hydrozoa). The polyps of C. uchidai simultaneously formed multiple tentacles in a regularly spaced, ring-like pattern exhibiting radial symmetry. Multiple such rings appeared periodically along the body and largely maintained symmetrical organization. Additionally, the researchers observed polymorphisms in symmetry types—specifically tri-, tetra-, and pentaradial symmetries—occurring as individual variations. Notably, the type of radial symmetry was positively correlated with polyp diameter, with pentaradial polyps exhibiting a larger diameter than tetra- or triradial ones. Their mathematical model suggested that the selection of size-dependent radial symmetry is governed by activation-inhibition dynamics and positional information emanating from the mouth that guides tentacle initiation.
License
CC BY
Released at
Oct. 20, 2025, midnight
Updated at
Funding
This work was supported by Grants-in-Aid for Scientific Research from the Ministry of Education, Culture, Sports, Science, and Technology of Japan for SS (22KJ3132) and KF (21K19297 and 22H04719).
# of image datasets
11

Papers

Papers
Paper information: Sarper SE, Kitazawa MS, Nakanishi T, Fujimoto K. Size-correlated polymorphisms in phyllotaxis-like periodic and symmetric tentacle arrangements in hydrozoan Coryne uchidai. Front Cell Dev Biol. 2023 Nov 22:11:1284904.,
Pubmed ID: 38078002,
PMCID: PMC10703359,
DOI: https://doi.org/10.3389/fcell.2023.1284904,
URL: https://pubmed.ncbi.nlm.nih.gov/38078002/

Contacts

Contacts
Safiye E. Sarper (Contact) , Laboratory for Evolutionary Morphology, Center for Biosystems Dynamics Research , RIKEN
Miho S. Kitazawa (Imaging Contributor) , Center for Education in Liberal Arts and Sciences , Osaka University
Tamami Nakanishi (Imaging Contributor) , Laboratory for Evolutionary Morphology, Center for Biosystems Dynamics Research , RIKEN
Koichi Fujimoto (Imaging Contributor) , Program of Mathematical and Life Sciences , Hiroshima University

Biosamples

Organisms
Coryne uchidai (NCBI:txid662077)
Strains

Cells

Cell lines

Ontologies

UBERON
Anatomical entities
GO: Biological processes
growth (GO:0040007)
anatomical structure formation involved in morphogenesis (GO:0048646)
GO: Cellular components
GO: Molecular functions

Genetics

Gene names
Protein names
Genetic methods
Protein tags
Probes
4',6-diamidino-2-phenylindole (DAPI) (FBbi:00000056)
Oligo Primer
Genotype

Treatments

Reagent or Compound
Concentration
Fold Dilution

Imaging Methods

Dimensions
1024x1024x507x1x1, 1024x1024x507x1x1, 1024x1024x507x1x1, 1024x1024x507x1x1, 1024x1024x507x1x1, 1024x1024x507x1x1, 1024x1024x507x1x1, 1024x1024x507x1x1, 1925x3698x507x1x1, 1024x1024x496x1x1, 1388x1040x172x1x117, 1024x1024x467x1x1, 1024x1024x467x1x1, 1024x1024x467x1x1, 1024x1024x467x1x1, 1024x1024x467x1x1, 1932x1924x467x1x1, 1024x1024x596x1x1, 1024x1024x596x1x1, 1024x1024x596x1x1, 1024x1024x596x1x1, 1931x1891x596x1x1, 1024x1024x453x1x1, 1024x1024x453x1x1, 1024x1024x453x1x1, 1024x1024x453x1x1, 1024x1024x453x1x1, 1024x1024x453x1x1, 2835x1889x453x1x1, 1024x1024x575x1x1, 1024x1024x587x1x1, 1024x1024x407x2x1, 1024x1024x473x1x1, 1024x1024x445x1x1, 1024x1024x445x1x1, 1024x1024x445x1x1, 1024x1024x445x1x1, 1024x1024x445x1x1, 1024x1024x445x1x1, 1024x1024x445x1x1, 1024x1024x445x1x1, 1936x3697x445x1x1, 1388x1040x161x1x206, 1388x1040x211x1x106, 1024x1024x457x1x1, 1024x1024x457x1x1, 1024x1024x457x1x1, 1024x1024x457x1x1, 1024x1024x457x1x1, 1024x1024x457x1x1, 1950x2869x457x1x1, 2214x1659x49x1x168,
X scales
0.76 micrometer, 1.6 micrometer, 3.25 micrometer, 0.57 micrometer, 2.53 micrometer,
Y scales
0.76 micrometer, 1.6 micrometer, 3.25 micrometer, 0.57 micrometer, 2.53 micrometer,
Z scales
1.04 micrometer, 8 micrometer, 20 micrometer, 15 micrometer,
T scales
9 minute, NA, 10 minute, 8 minute, 5 minute,
Channels
2 channel, 1 channel,
Microscopy types
confocal microscopy (FBbi:00000251)
time lapse microscopy (FBbi:00000249)
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Body
Leica SP8, Wetzlar
Model
Light source
Detector
Objective
Filter set
Dichroic
Body
Zeiss Axio Zoom.V16
Model
Light source
Detector
Objective
Filter set
Dichroic

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Coryne uchidai (NCBI:txid662077)
1024x1024x453x1x1, 1024x1024x453x1x1, 1024x1024x453x1x1, 1024x1024x453x1x1, 1024x1024x453x1x1, 1024x1024x453x1x1, 2835x1889x453x1x1, 1024x1024x575x1x1, 1024x1024x587x1x1, 1024x1024x407x2x1
8GB
zip
Coryne uchidai (NCBI:txid662077)
1388x1040x211x1x106
60.1GB
zip
Coryne uchidai (NCBI:txid662077)
1388x1040x161x1x206
95.8GB
zip
Coryne uchidai (NCBI:txid662077)
1388x1040x172x1x117
54.1GB
zip
Coryne uchidai (NCBI:txid662077)
2214x1659x49x1x168
22.1GB
zip
Coryne uchidai (NCBI:txid662077)
1024x1024x596x1x1, 1024x1024x596x1x1, 1024x1024x596x1x1, 1024x1024x596x1x1, 1931x1891x596x1x1
5GB
zip
Coryne uchidai (NCBI:txid662077)
1024x1024x473x1x1
567MB
zip
Coryne uchidai (NCBI:txid662077)
1024x1024x457x1x1, 1024x1024x457x1x1, 1024x1024x457x1x1, 1024x1024x457x1x1, 1024x1024x457x1x1, 1024x1024x457x1x1, 1950x2869x457x1x1
5.8MB
zip
Coryne uchidai (NCBI:txid662077)
1024x1024x467x1x1, 1024x1024x467x1x1, 1024x1024x467x1x1, 1024x1024x467x1x1, 1024x1024x467x1x1, 1932x1924x467x1x1
4.5GB
zip
Coryne uchidai (NCBI:txid662077)
1024x1024x507x1x1, 1024x1024x507x1x1, 1024x1024x507x1x1, 1024x1024x507x1x1, 1024x1024x507x1x1, 1024x1024x507x1x1, 1024x1024x507x1x1, 1024x1024x507x1x1, 1925x3698x507x1x1, 1024x1024x496x1x1
9.1GB
zip
Coryne uchidai (NCBI:txid662077)
1024x1024x445x1x1, 1024x1024x445x1x1, 1024x1024x445x1x1, 1024x1024x445x1x1, 1024x1024x445x1x1, 1024x1024x445x1x1, 1024x1024x445x1x1, 1024x1024x445x1x1, 1936x3697x445x1x1
7.5GB
zip