SSBD:database

337-Isoe-BrainRegion

OMERO gallery,

OMERO index

Project

Title

3D medaka brain visualized clonally related units in the pallium

Description

License

CC BY

Released at

Dec. 14, 2024, midnight

Updated at

Funding

# of image datasets

89

Papers

Papers

Paper information: Yasuko Isoe, Ryohei Nakamura, Shigenori Nonaka, Yasuhiro Kamei, Teruhiro Okuyama, Naoyuki Yamamoto, Hideaki Takeuchi, Hiroyuki Takeda (2023) Epigenetically distinct synaptic architecture in clonal compartments in the teleostean dorsal pallium., eLife, Volume 12,
Pubmed ID: 37489039,
DOI: https://doi.org/10.7554/eLife.85093,

Contacts

Contacts

Yasuko Isoe (Contact) , Department of Molecular and Cellular Biology , Harvard University
Ryohei Nakamura (Image dataset contributor)

Biosamples

Organisms

Oryzias latipes (NCBI:txid8091)
Oryzias latipes (NCBI:txid8090)

Strains

NA
HuC:loxp-DsRed-loxp-GFP, HSP-Cre

Cells

Cell lines

NA

Anatomical information

UBERON

Anatomical entities

Gene ontology

GO: Biological processes

neuron migration (GO:0001764)
neurogenesis (GO:0022008)

GO: Cellular components

GO: Molecular functions

Molecular biological information

Gene names

Protein names

Genetic methods

Protein tags

Probes

Oligo Primer

Genotype

Reagent or Compound

Reagent or Compound

Concentration

Fold Dilution

Imaging information

Dimensions

X scales

5.1692 micrometer/pixel, NA,

Y scales

5.1692 micrometer/pixel, NA,

Z scales

2.6 micrometer/slice, NA,

T scales

NA,

Channels

,

Biological Imaging Methods Ontology

Microscopy types

Detection methods

Visualization methods

Illumination methods

Sources of contrast

Contrast enhancing methods

Resolution enhancing methods

Imaged parameters

Sample preparation methods

Instruments

Datasets

Dataset name

Organism

Gene / Protein

Dimensions

File size

SSBD:OMERO

Download

Video1_ReferenceBrain

Oryzias latipes (NCBI:txid8090)

23969237

Gallery, Index

zip

Video2_pallium

Oryzias latipes (NCBI:txid8091)

347164685

Gallery, Index

zip

Video3_subpallium

Oryzias latipes (NCBI:txid8091)

185928334

Gallery, Index

zip

Brain_1

Oryzias latipes (NCBI:txid8091)

155239241

Gallery, Index

zip

Brain_2

Oryzias latipes (NCBI:txid8091)

135290191

Gallery, Index

zip

Brain_3

Oryzias latipes (NCBI:txid8091)

126172363

Gallery, Index

zip

Brain_5

Oryzias latipes (NCBI:txid8091)

77708713

Gallery, Index

zip

Brain_6

Oryzias latipes (NCBI:txid8091)

67361089

Gallery, Index

zip

Brain_7

Oryzias latipes (NCBI:txid8091)

45441097

Gallery, Index

zip

Brain_8

Oryzias latipes (NCBI:txid8091)

223784916

Gallery, Index

zip

Brain_9

Oryzias latipes (NCBI:txid8091)

106210976

Gallery, Index

zip

Brain_10

Oryzias latipes (NCBI:txid8091)

52700301

Gallery, Index

zip

Brain_11

Oryzias latipes (NCBI:txid8091)

46541200

Gallery, Index

zip

Brain_12

Oryzias latipes (NCBI:txid8091)

175652184

Gallery, Index

zip

Brain_13

Oryzias latipes (NCBI:txid8091)

178096008

Gallery, Index

zip

Brain_14

Oryzias latipes (NCBI:txid8091)

156285808

Gallery, Index

zip

Brain_15

Oryzias latipes (NCBI:txid8091)

85443383

Gallery, Index

zip

Brain_16

Oryzias latipes (NCBI:txid8091)

56413021

Gallery, Index

zip

Brain_17

Oryzias latipes (NCBI:txid8091)

188659335

Gallery, Index

zip

Brain_19

Oryzias latipes (NCBI:txid8091)

159853894

Gallery, Index

zip

Brain_20

Oryzias latipes (NCBI:txid8091)

163678660

Gallery, Index

zip

Brain_21

Oryzias latipes (NCBI:txid8091)

109820982

Gallery, Index

zip

Brain_22

Oryzias latipes (NCBI:txid8091)

107411610

Gallery, Index

zip

Brain_23

Oryzias latipes (NCBI:txid8091)

50551950

Gallery, Index

zip

Brain_24

Oryzias latipes (NCBI:txid8091)

106157622

Gallery, Index

zip

Brain_25

Oryzias latipes (NCBI:txid8091)

55485354

Gallery, Index

zip

Brain_26

Oryzias latipes (NCBI:txid8091)

106344774

Gallery, Index

zip

Brain_27

Oryzias latipes (NCBI:txid8091)

106157622

Gallery, Index

zip

Brain_28

Oryzias latipes (NCBI:txid8091)

59996910

Gallery, Index

zip

Brain_29

Oryzias latipes (NCBI:txid8091)

79800654

Gallery, Index

zip

Brain_30

Oryzias latipes (NCBI:txid8091)

82079463

Gallery, Index

zip

Brain_31

Oryzias latipes (NCBI:txid8091)

105305502

Gallery, Index

zip

Brain_32

Oryzias latipes (NCBI:txid8091)

107097666

Gallery, Index

zip

Brain_33

Oryzias latipes (NCBI:txid8091)

216093678

Gallery, Index

zip

Brain_34

Oryzias latipes (NCBI:txid8091)

106324014

Gallery, Index

zip

Brain_35

Oryzias latipes (NCBI:txid8091)

107795784

Gallery, Index

zip

Brain_36

Oryzias latipes (NCBI:txid8091)

78627270

Gallery, Index

zip

Brain_37

Oryzias latipes (NCBI:txid8091)

74911899

Gallery, Index

zip

Brain_38

Oryzias latipes (NCBI:txid8091)

143518332

Gallery, Index

zip

Brain_39

Oryzias latipes (NCBI:txid8091)

142513410

Gallery, Index

zip

Brain_40

Oryzias latipes (NCBI:txid8091)

145769916

Gallery, Index

zip

Brain_41

Oryzias latipes (NCBI:txid8091)

143328954

Gallery, Index

zip

Brain_43

Oryzias latipes (NCBI:txid8091)

142029264

Gallery, Index

zip

Brain_44

Oryzias latipes (NCBI:txid8091)

102121446

Gallery, Index

zip

Brain_45

Oryzias latipes (NCBI:txid8091)

118564878

Gallery, Index

zip

Brain_46

Oryzias latipes (NCBI:txid8091)

91657272

Gallery, Index

zip

Brain_47

Oryzias latipes (NCBI:txid8091)

111269721

Gallery, Index

zip

Brain_48

Oryzias latipes (NCBI:txid8091)

110788758

Gallery, Index

zip

Brain_49

Oryzias latipes (NCBI:txid8091)

92657982

Gallery, Index

zip

Brain_50

Oryzias latipes (NCBI:txid8091)

99844842

Gallery, Index

zip

Brain_52

Oryzias latipes (NCBI:txid8091)

169951882

Gallery, Index

zip

Brain_53

Oryzias latipes (NCBI:txid8091)

170937592

Gallery, Index

zip

Brain_54

Oryzias latipes (NCBI:txid8091)

170937592

Gallery, Index

zip

Brain_55

Oryzias latipes (NCBI:txid8091)

132844297

Gallery, Index

zip

Brain_56

Oryzias latipes (NCBI:txid8091)

129209530

Gallery, Index

zip

Brain_57

Oryzias latipes (NCBI:txid8091)

132533302

Gallery, Index

zip

Brain_58

Oryzias latipes (NCBI:txid8091)

99466822

Gallery, Index

zip

Brain_59

Oryzias latipes (NCBI:txid8091)

139201960

Gallery, Index

zip

Brain_60

Oryzias latipes (NCBI:txid8091)

115991752

Gallery, Index

zip

Brain_61

Oryzias latipes (NCBI:txid8091)

113427448

Gallery, Index

zip

Brain_62

Oryzias latipes (NCBI:txid8091)

120260164

Gallery, Index

zip

Brain_63

Oryzias latipes (NCBI:txid8091)

117418996

Gallery, Index

zip

Brain_64

Oryzias latipes (NCBI:txid8091)

108917536

Gallery, Index

zip

Brain_65

Oryzias latipes (NCBI:txid8091)

106051288

Gallery, Index

zip

Brain_66

Oryzias latipes (NCBI:txid8091)

107746120

Gallery, Index

zip

Brain_67

Oryzias latipes (NCBI:txid8091)

108917662

Gallery, Index

zip

Brain_69

Oryzias latipes (NCBI:txid8091)

100519762

Gallery, Index

zip

Brain_70

Oryzias latipes (NCBI:txid8091)

86502126

Gallery, Index

zip

Brain_71

Oryzias latipes (NCBI:txid8091)

76904035

Gallery, Index

zip

Brain_72

Oryzias latipes (NCBI:txid8091)

78949047

Gallery, Index

zip

Brain_73

Oryzias latipes (NCBI:txid8091)

86098350

Gallery, Index

zip

Brain_74

Oryzias latipes (NCBI:txid8091)

33622207

Gallery, Index

zip

Brain_75

Oryzias latipes (NCBI:txid8091)

559340157

Gallery, Index

zip

Brain_76

Oryzias latipes (NCBI:txid8091)

131980827

Gallery, Index

zip

Brain_77

Oryzias latipes (NCBI:txid8091)

180201795

Gallery, Index

zip

Brain_78

Oryzias latipes (NCBI:txid8091)

255852813

Gallery, Index

zip

Brain_78_rotate

Oryzias latipes (NCBI:txid8091)

247297898

Gallery, Index

zip

Brain_79

Oryzias latipes (NCBI:txid8091)

248977603

Gallery, Index

zip

Brain_80

Oryzias latipes (NCBI:txid8091)

251041651

Gallery, Index

zip

Brain_81

Oryzias latipes (NCBI:txid8091)

259259212

Gallery, Index

zip

Brain_82_left

Oryzias latipes (NCBI:txid8091)

328847953

Gallery, Index

zip

Brain_82_right

Oryzias latipes (NCBI:txid8091)

324333415

Gallery, Index

zip

Brain_83_left

Oryzias latipes (NCBI:txid8091)

372444937

Gallery, Index

zip

Brain_83_right

Oryzias latipes (NCBI:txid8091)

362681752

Gallery, Index

zip

Brain_84

Oryzias latipes (NCBI:txid8091)

284900521

Gallery, Index

zip

Brain_85_left

Oryzias latipes (NCBI:txid8091)

283884637

Gallery, Index

zip

Brain_85_right

Oryzias latipes (NCBI:txid8091)

148409565

Gallery, Index

zip

Brain_86_left

Oryzias latipes (NCBI:txid8091)

420968875

Gallery, Index

zip

Brain_86_right

Oryzias latipes (NCBI:txid8091)

235934330

Gallery, Index

zip