SSBD:database

300-Nishiyama-Rdot

Project

Title
MCF-7 cells stained by 12 different colors of Rdots
Description
License
CC BY
Released at
Nov. 25, 2024, midnight
Updated at
Funding
# of image datasets
1

Papers

Papers
Paper information: Ryo Nishiyama, Kotaro Hiramatsu, Shintaro Kawamura, Kosuke Dodo, Kei Furuya, Julia Gala de Pablo, Shigekazu Takizawa, Wei Min, Mikiko Sodeoka, Keisuke Goda (2023) Color-scalable flow cytometry with Raman tags., PNAS Nexus, Volume 2, Number 2,
Pubmed ID: 36845353,
PMCID: 9950787,
DOI: https://doi.org/10.1093/pnasnexus/pgad001,

Contacts

Contacts
Kotaro Hiramatsu (Contact) , Faculty of Sciences Department of Chemistry , Kyusyu University
Keisuke Goda (Contact) , Department of Chemistry , The University of Tokyo
Ryo Nishiyama (Image dataset contributor)
Shintaro Kawamura (Image dataset contributor)
Kosuke Dodo (Image dataset contributor)
Mikiko Sodeoka (Image dataset contributor)

Biosamples

Organisms
Homo sapiens (NCBI:txid9606)
Strains
NA
Cells
Cell lines
MCF7 cell (CLO_0007606)

Anatomical information

UBERON
Anatomical entities

Gene ontology

GO: Biological processes
GO: Cellular components
GO: Molecular functions

Molecular biological information

Gene names
Protein names
Genetic methods
Protein tags
Probes
Oligo Primer
Genotype

Reagent or Compound

Reagent or Compound
Concentration
Fold Dilution

Imaging information

Dimensions
X scales
NA,
Y scales
NA,
Z scales
NA,
T scales
NA,
Channels
,

Biological Imaging Methods Ontology

Microscopy types
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Fig2C_Rdots
Homo sapiens (NCBI:txid9606)
666225310
zip