SSBD:database

227-Egoshi-RamanImaging

OMERO gallery,
OMERO index

Project

Title
Raman imaging in HeLa cells treated with D-alkyne-tagged C18FAs
Description
License
CC BY
Released at
Nov. 23, 2022, midnight
Updated at
Funding
# of image datasets
20

Papers

Papers
Paper information: Syusuke Egoshi, Kosuke Dodo, Kenji Ohgane, Mikiko Sodeoka (2021) Deuteration of terminal alkynes realizes simultaneous live cell Raman imaging of similar alkyne-tagged biomolecules., Organic & biomolecular chemistry, Volume 19, Number 38, pp. 8232-8236,
Pubmed ID: 34528645,
DOI: https://doi.org/10.1039/d1ob01479j,
URL: https://pubs.rsc.org/en/content/articlelanding/2021/OB/D1OB01479J

Contacts

Contacts
Mikiko Sodeoka (Contact) , Cluster for Pioneering Research , RIKEN
Kosuke Dodo (Contact) , Cluster for Pioneering Research , RIKEN
Syusuke Egoshi (Contact) , Cluster for Pioneering Research , RIKEN

Biosamples

Organisms
Homo sapiens (NCBI:txid9606)
Strains
NA
Cells
Cell lines
HeLa cell (CLO_0003684)

Anatomical information

UBERON
Anatomical entities

Gene ontology

GO: Biological processes
GO: Cellular components
GO: Molecular functions

Molecular biological information

Gene names
Protein names
Genetic methods
Protein tags
Probes
Oligo Primer
Genotype

Reagent or Compound

Reagent or Compound
Concentration
Fold Dilution

Imaging information

Dimensions
X scales
0.21 micrometer/ pixel,
Y scales
0.21 micrometer/ pixel,
Z scales
NA,
T scales
3 hours per time interval, NA,
Channels
,

Biological Imaging Methods Ontology

Microscopy types
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Fig3b_HeLa_ODYA_3
Homo sapiens (NCBI:txid9606)
382736
Gallery, Index
zip
Fig3c_HeLa_D-ODYA_D-3
Homo sapiens (NCBI:txid9606)
456328
Gallery, Index
zip
Fig3d_HeLa_YOA_5
Homo sapiens (NCBI:txid9606)
432046
Gallery, Index
zip
Fig5_HeLa_dual_1to1
Homo sapiens (NCBI:txid9606)
287976
Gallery, Index
zip
Fig5_HeLa_dual_2to1
Homo sapiens (NCBI:txid9606)
343680
Gallery, Index
zip
Fig5_HeLa_dual_4to1
Homo sapiens (NCBI:txid9606)
369120
Gallery, Index
zip
FigS6_HeLa_dual_D-alkyne
Homo sapiens (NCBI:txid9606)
29549
Gallery, Index
zip
FigS6_HeLa_dual_H-alkyne
Homo sapiens (NCBI:txid9606)
29549
Gallery, Index
zip
FigS7_HeLa_ODYA_3_100uM
Homo sapiens (NCBI:txid9606)
241435
Gallery, Index
zip
FigS7_HeLa_ODYA_3_200uM
Homo sapiens (NCBI:txid9606)
185895
Gallery, Index
zip
FigS7_HeLa_ODYA_3_400uM
Homo sapiens (NCBI:txid9606)
141199
Gallery, Index
zip
FigS7_HeLa_ODYA_D-3_100uM
Homo sapiens (NCBI:txid9606)
234971
Gallery, Index
zip
FigS7_HeLa_ODYA_D-3_200uM
Homo sapiens (NCBI:txid9606)
164431
Gallery, Index
zip
FigS7_HeLa_ODYA_D-3_400uM
Homo sapiens (NCBI:txid9606)
221363
Gallery, Index
zip
FigS8_HeLa_dual_100uM_cis-olefin
Homo sapiens (NCBI:txid9606)
42021
Gallery, Index
zip
FigS8_HeLa_dual_100uM_H-alkyne
Homo sapiens (NCBI:txid9606)
42026
Gallery, Index
zip
FigS8_HeLa_dual_100uM_cis-olefin_2
Homo sapiens (NCBI:txid9606)
69041
Gallery, Index
zip
FigS8_HeLa_dual_200uM_H-alkyne
Homo sapiens (NCBI:txid9606)
69046
Gallery, Index
zip
FigS8_HeLa_dual_100uM_cis-olefin_3
Homo sapiens (NCBI:txid9606)
57381
Gallery, Index
zip
FigS8_HeLa_dual_400uM_H-alkyne
Homo sapiens (NCBI:txid9606)
57386
Gallery, Index
zip