SSBD:database

218-Tanaka-CellSignallingDyn

OMERO gallery,
OMERO index

Project

Title
Live imaging of different cells response to IFN-γ both in vivo and in vitro and BDML file for quantitative information of tumor size in B6 albino mice implanted with different cells.
Description
License
CC BY
Released at
Nov. 23, 2022, midnight
Updated at
Funding
# of image datasets
32

Papers

Papers
Paper information: Taisei Tanaka, Yoshinobu Konishi, Hiroshi Ichise, Shinya Tsukiji, Michiyuki Matsuda, Kenta Terai (2021) A Dual Promoter System to Monitor IFN-gamma Signaling in vivo at Single-cell Resolution., Cell structure and function, Volume 46, Number 2, pp. 103-111,
Pubmed ID: 34744115,
DOI: https://doi.org/10.1247/csf.21052,

Contacts

Contacts
Kenta Terai (Contact) , Graduate School of Medicine , kyoto University
Kenta Terai (Image dataset contributor)
Taisei Tanaka (Image dataset contributor)

Biosamples

Organisms
Mus musculus (NCBI:txid10090)
Strains
C57BL/6 (mouse)
Cells
Cell lines
Panc02 cel (NA)
BrafV600E cell (NA)
MC-38 cell (NA)
B16F10 melanoma cell (NA)

Anatomical information

UBERON
Anatomical entities

Gene ontology

GO: Biological processes
GO: Cellular components
GO: Molecular functions

Molecular biological information

Gene names
Protein names
Genetic methods
Protein tags
Probes
Oligo Primer
Genotype

Reagent or Compound

Reagent or Compound
Concentration
Fold Dilution

Imaging information

Dimensions
X scales
0.414 micrometer/pixel, 0.64 micrometer/pixel, 500 micrometer/pixel,
Y scales
0.414 micrometer/pixel, 0.64 micrometer/pixel, 500 micrometer/pixel,
Z scales
10 micrometer/slice, NA,
T scales
NA, 2 hours per time interval, 30 sec interval in each file. 1 day per time interval.,
Channels
,

Biological Imaging Methods Ontology

Microscopy types
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Figure2D_B16F10_GAS_IFN-v
Mus musculus (NCBI:txid10090)
469928005
Gallery, Index
zip
Figure2D_B16F10_GAS_IFN-v-
Mus musculus (NCBI:txid10090)
52214211
Gallery, Index
zip
Figure2D_B16F10_ISRE_IFN-v
Mus musculus (NCBI:txid10090)
469928920
Gallery, Index
zip
Figure2D_B16F10_ISRE_IFN-v-
Mus musculus (NCBI:txid10090)
52214316
Gallery, Index
zip
Figure2D_Braf_GAS_IFN-v
Mus musculus (NCBI:txid10090)
469929814
Gallery, Index
zip
Figure2D_Braf_GAS_IFN-v-
Mus musculus (NCBI:txid10090)
52214410
Gallery, Index
zip
Figure2D_Braf_ISRE_IFN-v
Mus musculus (NCBI:txid10090)
469930683
Gallery, Index
zip
Figure2D_Braf_ISRE_IFN-v-
Mus musculus (NCBI:txid10090)
52214509
Gallery, Index
zip
Figure2D_MC-38_GAS_IFN-v
Mus musculus (NCBI:txid10090)
469927140
Gallery, Index
zip
Figure2D_MC-38_GAS_IFN-v-
Mus musculus (NCBI:txid10090)
52214116
Gallery, Index
zip
Figure2D_MC-38_ISRE_IFN-v
Mus musculus (NCBI:txid10090)
487331811
Gallery, Index
zip
Figure2D_MC-38_ISRE_IFN-v-
Mus musculus (NCBI:txid10090)
52213818
Gallery, Index
zip
Figure2D_Panc02_GAS_IFN-v
Mus musculus (NCBI:txid10090)
469928000
Gallery, Index
zip
Figure2D_Panc02_GAS_IFN-v-
Mus musculus (NCBI:txid10090)
52214212
Gallery, Index
zip
Figure2D_Panc02_ISRE_IFN-v
Mus musculus (NCBI:txid10090)
469928912
Gallery, Index
zip
Figure2D_Panc02_ISRE_IFN-v-
Mus musculus (NCBI:txid10090)
52214313
Gallery, Index
zip
Figure3C_upperWT_lowerIfngrKO_mice_tumor
Mus musculus (NCBI:txid10090)
149629164
Gallery, Index
zip
Figure4A_20210719_MIIS_GAS_mice_tumor
Mus musculus (NCBI:txid10090)
193009461
Gallery, Index
zip
Figure4A_20210816_MIIS_GAS_mice_tumor
Mus musculus (NCBI:txid10090)
112720714
Gallery, Index
zip
Figure4A_MIIS_GAS_mice_tumor
Mus musculus (NCBI:txid10090)
139105713
Gallery, Index
zip
Figure4B_Brafv600E_mice_tumor
Mus musculus (NCBI:txid10090)
139105713
Gallery, Index
zip
Figure4D_Brafv600Ecell_GAS_20210821_IFNgR1KO-1
Mus musculus (NCBI:txid10090)
116748448
Gallery, Index
zip
Figure4D_Brafv600Ecell_GAS_20210821_IFNgR1KO-2
Mus musculus (NCBI:txid10090)
102240416
Gallery, Index
zip
Figure4D_Brafv600Ecell_GAS_20210821_IFNgR1KO-3
Mus musculus (NCBI:txid10090)
109609145
Gallery, Index
zip
Figure4D_Brafv600Ecell_GAS_20210821_WT1
Mus musculus (NCBI:txid10090)
103862432
Gallery, Index
zip
Figure4D_Brafv600Ecell_GAS_20210821_WT3
Mus musculus (NCBI:txid10090)
105476256
Gallery, Index
zip
Figure4D_Brafv600Ecell_GAS_20210823_GqKO-1
Mus musculus (NCBI:txid10090)
91869369
Gallery, Index
zip
Figure4D_Brafv600Ecell_GAS_20210823_GqKO-2
Mus musculus (NCBI:txid10090)
100634784
Gallery, Index
zip
Figure4D_Brafv600Ecell_GAS_20210823_GqKO-3
Mus musculus (NCBI:txid10090)
59404423
Gallery, Index
zip
Figure4D_Brafv600Ecell_GAS_20210823_GqKOIFNgR1KO-1
Mus musculus (NCBI:txid10090)
91873465
Gallery, Index
zip
Figure4D_Brafv600Ecell_GAS_20210823_GqKOIFNgR1KO-2
Mus musculus (NCBI:txid10090)
82198713
Gallery, Index
zip
Figure4D_Brafv600Ecell_GAS_20210823_GqKOIFNgR1KO-3
Mus musculus (NCBI:txid10090)
70189266
Gallery, Index
zip