SSBD:database

205-Shen-CellPatterning

OMERO gallery,
OMERO index

Project

Title
Images and BDML file for quantitative information about mouse skeletal myoblasts C2C12 adhered on a surface with the native or cross-linked albumin structure for several days.
Description
License
CC BY
Released at
March 31, 2022, midnight
Updated at
Funding
# of image datasets
5

Papers

Papers
Paper information: Yigang Shen, Nobuyuki Tanaka, Hironori Yamazoe, Shunsuke Furutani, Hidenori Nagai, Takayuki Kawai, Yo Tanaka (2020) Flow analysis on microcasting with degassed polydimethylsiloxane micro-channels for cell patterning with cross-linked albumin., PloS one, Volume 15, Number 5, pp. e0232518,
Pubmed ID: 32433673,
PMCID: 7239381,
DOI: https://doi.org/10.1371/journal.pone.0232518,

Contacts

Contacts
Yo Tanaka (Contact) , Center for Biosystems Dynamics Research , RIKEN
Yigang Shen (Image dataset contributor)
Nobuyuki Tanaka (Image dataset contributor)

Biosamples

Organisms
Mus musculus (NCBI:txid10090)
Strains
NA
Cells
Cell lines
C2C12 (CLO_0050871)

Anatomical information

UBERON
Anatomical entities

Gene ontology

GO: Biological processes
GO: Cellular components
GO: Molecular functions

Molecular biological information

Gene names
Protein names
Genetic methods
Protein tags
Probes
Oligo Primer
Genotype

Reagent or Compound

Reagent or Compound
Concentration
Fold Dilution

Imaging information

Dimensions
X scales
NA,
Y scales
NA,
Z scales
NA,
T scales
1 day per time interval,
Channels
,

Biological Imaging Methods Ontology

Microscopy types
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
fig7_myoblastsC2C12_native
Mus musculus (NCBI:txid10090)
155934450
Gallery, Index
zip
fig7_myoblastsC2C12_W0.1
Mus musculus (NCBI:txid10090)
272885322
Gallery, Index
zip
fig7_myoblastsC2C12_W0.2
Mus musculus (NCBI:txid10090)
272885322
Gallery, Index
zip
fig7_myoblastsC2C12_W0.4
Mus musculus (NCBI:txid10090)
272885322
Gallery, Index
zip
fig7_myoblastsC2C12_W0.8
Mus musculus (NCBI:txid10090)
272885322
Gallery, Index
zip