SSBD:database

203-Tanabe-SingleDyn

OMERO gallery,
OMERO index

Project

Title
Images of signaling molecules dynamic in Dictyostelium discoideum cells.
Description
License
CC BY
Released at
March 31, 2022, midnight
Updated at
Funding
# of image datasets
11

Papers

Papers
Paper information: Yuki Tanabe, Yoichiro Kamimura, Masahiro Ueda (2018) Parallel signaling pathways regulate excitable dynamics differently to mediate pseudopod formation during eukaryotic chemotaxis., Journal of cell science, Volume 131, Number 23,
Pubmed ID: 30404836,
DOI: https://doi.org/10.1242/jcs.214775,

Contacts

Contacts
Masahiro Ueda (Contact) , Graduate School of Frontier Biosciences , Osaka University

Biosamples

Organisms
Dictyostelium discoideum (NCBI:txid44689)
Strains
Dictyostelium discoideum AX2 (NCBI:txid366501)
gcΔ cell
Cells
Cell lines

Anatomical information

UBERON
Anatomical entities

Gene ontology

GO: Biological processes
chemotaxis (GO:0006935)
GO: Cellular components
GO: Molecular functions

Molecular biological information

Gene names
Protein names
Genetic methods
Protein tags
Probes
Oligo Primer
Genotype

Reagent or Compound

Reagent or Compound
Concentration
Fold Dilution

Imaging information

Dimensions
X scales
0.11 micrometer/pixel, 0.174 micrometer/pixel, 6.0606 micrometer/pixel, 0.254 micrometer/pixel, 3.9370 micrometer/pixel,
Y scales
0.11 micrometer/pixel, 0.174 micrometer/pixel, 6.0606 micrometer/pixel, 0.254 micrometer/pixel, 3.9370 micrometer/pixel,
Z scales
NA,
T scales
2.99 second per time interval, 2.95 second per time interval, 5 second per time interval, 3 second per time interval,
Channels
,

Biological Imaging Methods Ontology

Microscopy types
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Fig1A_sGC_PIP3_membrane
Dictyostelium discoideum (NCBI:txid44689)
12358040
Gallery, Index
zip
Fig1FG_cAMP_chemotaxis
Dictyostelium discoideum (NCBI:txid44689)
142424624
Gallery, Index
zip
Fig2A_sGC-GFP_pulse
Dictyostelium discoideum (NCBI:txid44689)
626464
Gallery, Index
zip
Fig2A_sGC-GFP_step
Dictyostelium discoideum (NCBI:txid44689)
935282
Gallery, Index
zip
Fig2B_sGC-GFP_0.5sec
Dictyostelium discoideum (NCBI:txid44689)
6366191
Gallery, Index
zip
Fig2B_sGC-GFP_1.5sec
Dictyostelium discoideum (NCBI:txid44689)
6392654
Gallery, Index
zip
Fig2B_sGC-GFP_Sp
Dictyostelium discoideum (NCBI:txid44689)
6366188
Gallery, Index
zip
Fig2C_WT_mRFP-Lim_sGC-GFP
Dictyostelium discoideum (NCBI:txid44689)
17369473
Gallery, Index
zip
Fig3C_WT_PHPKB-GFP_sGCN-TMR
Dictyostelium discoideum (NCBI:txid44689)
6590618
Gallery, Index
zip
Fig4A_sGCcat-GFP_cAMP
Dictyostelium discoideum (NCBI:txid44689)
41896558
Gallery, Index
zip
Fig4A_sGCWT-GFP_cAMP
Dictyostelium discoideum (NCBI:txid44689)
25508289
Gallery, Index
zip