199-Ichimura-MulticellularDyn

Project

Title
Imaging data of centimeter-scale dynamics of multicellular systems observed with sub-cellular resolution.
Description
License
CC BY-NC
Released at
Nov. 23, 2022, midnight
Updated at
Funding
# of image datasets
7

Papers

Papers
Paper information: T Ichimura, T Kakizuka, K Horikawa, K Seiriki, A Kasai, H Hashimoto, K Fujita, T M Watanabe, T Nagai (2021) Exploring rare cellular activity in more than one million cells by a transscale scope., Scientific reports, Volume 11, Number 1, pp. 16539,
Pubmed ID: 34400683,
PMCID: 8368064,
DOI: https://doi.org/10.1038/s41598-021-95930-7,
URL: https://www.nature.com/articles/s41598-021-95930-7 Paper information: Ichimura, T., Kakizuka, T., Horikawa, K., Seiriki, K., Kasai, A., Hashimoto, H., Fujita, K., Watanabe, T. M., Nagai, T. (2021/01/01), Exploring rare cellular activity in more than one million cells by a trans-scale-scope, bioRxiv, 2020.06.29.179044,
DOI: https://doi.org/10.1101/2020.06.29.179044,

Contacts

Contacts
Takeharu Nagai (Contact) , Osaka University

Biosamples

Organisms
Homo sapiens (NCBI:txid9606)
Canis lupus familiaris (NCBI:txid9615)
Dictyostelium discoideum (NCBI:txid44689)
Mus musculus (NCBI:txid10090)
Strains
NA
Cells
Cell lines

HeLa cell (CLO_0003684)
MDCK cell (CLO_0007646)

Anatomical information

UBERON
Anatomical entities

Gene ontology

GO: Biological processes
cAMP-mediated signaling (GO:0019933)
calcium-mediated signaling (GO:0019722)
GO: Cellular components
nucleus (GO:0005634)
GO: Molecular functions

Molecular biological information

Gene names
Protein names
Genetic methods
Protein tags
Probes
Oligo Primer
Genotype

Reagent or Compound

Reagent or Compound
Concentration
Fold Dilution

Imaging information

Dimensions
X scales
1.1 micrometer/pixel,
Y scales
1.1 micrometer/pixel,
Z scales
NA,
T scales
30 seconds per frame, 5 seconds per frame, 9.4 frames per second, NA,
Channels
,

Biological Imaging Methods Ontology

Microscopy types
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Mus musculus (NCBI:txid10090)
365290758
zip
Canis lupus familiaris (NCBI:txid9615)
243600940
zip
Canis lupus familiaris (NCBI:txid9615)
243600939
zip
Homo sapiens (NCBI:txid9606)
48720187392
zip
Homo sapiens (NCBI:txid9606)
48720187392
zip
Dictyostelium discoideum (NCBI:txid44689)
233892617928
zip
Dictyostelium discoideum (NCBI:txid44689)
233892617928
zip