SSBD:database

140-Hirata-MouseBrainSlice

Author reviewed

Atlas of neuronal birthdate tagging mouse lines

SSBD:OMERO.gallery SSBD:OMERO

SSBD:downloads

Project ID

140-Hirata-MouseBrainSlice

Title

Atlas of neuronal birthdate tagging mouse lines

Description

Release Date

2022-04-15

Update Date

License

CC BY

Version

1.0.0

Method Summary

See details in Hirata et al., NeuroGT: A brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and manipulation of mouse neurons, Cell Reports Methods 100012, 2021

Paper DOI

https://doi.org/10.1016/j.crmeth.2021.100012

Paper URL

https://www.cell.com/cell-reports-methods/fulltext/S2667-2375(21)00012-6

Kind

Image data

Total

4294 files / 8.2 TB

Image datasets

zipped 84 files / 1.6 TB, raw image 1245 files / 1.6 TB, total 1329 files / 3.3 TB

Quantitative datasets

zipped 0 files / 0 bytes, raw bdml 0 files / 0 bytes, total 0 files / 0 bytes

Organism

Mus musculus ( NCBITaxon:10090 )

Strain

C57BL/6

Neurod1CreER(D1B); TaumGFP-nLacZ

Neurod4CreER(D4A); TaumGFP-nLacZ

Neurog1CreER(G1C); TaumGFP-nLacZ

Cell line

Biological Process

nervous system development ( GO:0007399 )

Cellular Component

plasma membrane ( GO:0005886 )

neuron projection ( GO:0043005 )

nucleus ( GO:0005634 )

cell body ( GO:0044297 )

Medical Subject Headings

neurons ( MeSH:D009474 )

axons ( MeSH:D001369 )

brain ( MeSH:D001921 )

mice transgenic ( MeSH:D008822 )

immunohistochemistry ( MeSH:D007150 )

cell body ( MeSH:D066146 )

Method involved in biological imaging

bright-field microscopy ( FBbi:00000243 )

chemically fixed tissue ( FBbi:00000002 )

cryostat-sectioned tissue ( FBbi:00000027 )

horseradish peroxidase ( FBbi:00000138 )

Image datasets

Quantitative datasets

Paper DOI / Paper URL

https://www.cell.com/cell-reports-methods/fulltext/S2667-2375(21)00012-6 , doi: 10.1016/j.crmeth.2021.100012

OMERO.gallery

https://ssbd.riken.jp/omero/gallery/show_project/728/

OMERO

https://ssbd.riken.jp/omero/webclient/?show=project-728

downloads

https://ssbd.riken.jp/data/140-Hirata-MouseBrainSlice/

People

Contact

Tatsumi Hirata

National Institute of Genetics

Brain Function Laboratory

1111 Yata, Mishima, Shizuoka 411-8540, Japan

Imaging dataset contributor

Toshihiko Fujimori (National Institute for Basic Biology)

Quantitative dataset contributor

Datasets

Thumbnail

Dataset

Organism

Kind / Links

D1BN_TM10.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N3) that was birthdate tagged at E10.5 (TM10.5) and visualized for membrane-localized GFP reporter

D1BN_TM10.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N3) that was birthdate tagged at E10.5 (TM10.5) and visualized for nucleus-localized beta-galactosidase reporter

D1BN_TM11.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N6) that was birthdate tagged at E11.5 (TM11.5) and visualized for membrane-localized GFP reporter

D1BN_TM11.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N6) that was birthdate tagged at E11.5 (TM11.5) and visualized for nucleus-localized beta-galactosidase reporter

D1BN_TM12.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:2) that was birthdate tagged at E12.5 (TM12.5) and visualized for membrane-localized GFP reporter

D1BN_TM12.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:2) that was birthdate tagged at E12.5 (TM12.5) and visualized for nucleus-localized beta-galactosidase reporter

D1BN_TM13.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N6) that was birthdate tagged at E13.5 (TM13.5) and visualized for membrane-localized GFP reporter

D1BN_TM13.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N6) that was birthdate tagged at E13.5 (TM13.5) and visualized for nucleus-localized beta-galactosidase reporter

D1BN_TM14.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N4) that was birthdate tagged at E14.5 (TM14.5) and visualized for membrane-localized GFP reporter

D1BN_TM14.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N4) that was birthdate tagged at E14.5 (TM14.5) and visualized for nucleus-localized beta-galactosidase reporter

D1BN_TM15.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N5) that was birthdate tagged at E15.5 (TM15.5) and visualized for membrane-localized GFP reporter

D1BN_TM15.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N5) that was birthdate tagged at E15.5 (TM15.5) and visualized for nucleus-localized beta-galactosidase reporter

D1BN_TM16.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E16.5 (TM16.5) and visualized for membrane-localized GFP reporter

D1BN_TM16.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E16.5 (TM16.5) and visualized for nucleus-localized beta-galactosidase reporter

D1BN_TM17.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E17.5 (TM17.5) and visualized for membrane-localized GFP reporter

D1BN_TM17.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E17.5 (TM17.5) and visualized for nucleus-localized beta-galactosidase reporter

D1BN_TM9.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N4) that was birthdate tagged at E9.5 (TM9.5) and visualized for membrane-localized GFP reporter

D1BN_TM9.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N4) that was birthdate tagged at E9.5 (TM9.5) and visualized for nucleus-localized beta-galactosidase reporter

D1BN_woTM_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P8 mouse (ID:1) without a TM injection (woTM) stained for membrane-localized GFP reporter

D1BN_woTM_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P8 mouse (ID:1) without a TM injection (woTM) stained for nucleus-localized beta-galactosidase reporter

D4AN_TM10.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E10.5 (TM10.5) and visualized for membrane-localized GFP reporter

D4AN_TM10.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E10.5 (TM10.5) and visualized for nucleus-localized beta-galactosidase reporter

D4AN_TM11.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E11.5 (TM11.5) and visualized for membrane-localized GFP reporter

D4AN_TM11.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E11.5 (TM11.5) and visualized for nucleus-localized beta-galactosidase reporter

D4AN_TM12.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E12.5 (TM12.5) and visualized for membrane-localized GFP reporter

D4AN_TM12.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E12.5 (TM12.5) and visualized for nucleus-localized beta-galactosidase reporter

D4AN_TM13.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P8 mouse (ID:2) that was birthdate tagged at E13.5 (TM13.5) and visualized for membrane-localized GFP reporter

D4AN_TM13.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P8 mouse (ID:2) that was birthdate tagged at E13.5 (TM13.5) and visualized for nucleus-localized beta-galactosidase reporter

D4AN_TM14.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N5) that was birthdate tagged at E14.5 (TM14.5) and visualized for membrane-localized GFP reporter

D4AN_TM14.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N5) that was birthdate tagged at E14.5 (TM14.5) and visualized for nucleus-localized beta-galactosidase reporter

D4AN_TM15.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E15.5 (TM15.5) and visualized for membrane-localized GFP reporter

D4AN_TM15.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E15.5 (TM15.5) and visualized for nucleus-localized beta-galactosidase reporter

D4AN_TM16.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:2) that was birthdate tagged at E16.5 (TM16.5) and visualized for membrane-localized GFP reporter

D4AN_TM16.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:2) that was birthdate tagged at E16.5 (TM16.5) and visualized for nucleus-localized beta-galactosidase reporter

D4AN_TM17.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N4) that was birthdate tagged at E17.5 (TM17.5) and visualized for membrane-localized GFP reporter

D4AN_TM17.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N4) that was birthdate tagged at E17.5 (TM17.5) and visualized for nucleus-localized beta-galactosidase reporter

D4AN_TM8.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E8.5 (TM8.5) and visualized for membrane-localized GFP reporter

D4AN_TM8.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E8.5 (TM8.5) and visualized for nucleus-localized beta-galactosidase reporter

D4AN_TM9.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E9.5 (TM9.5) and visualized for membrane-localized GFP reporter

D4AN_TM9.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E9.5 (TM9.5) and visualized for nucleus-localized beta-galactosidase reporter

D4AN_woTM_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) without a TM injection (woTM) stained for membrane-localized GFP reporter

D4AN_woTM_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) without a TM injection (woTM) stained for nucleus-localized beta-galactosidase reporter

G1CN_TM10.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E10.5 (TM10.5) and visualized for membrane-localized GFP reporter

G1CN_TM10.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E10.5 (TM10.5) and visualized for nucleus-localized beta-galactosidase reporter

G1CN_TM11.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N4) that was birthdate tagged at E11.5 (TM11.5) and visualized for membrane-localized GFP reporter

G1CN_TM11.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N4) that was birthdate tagged at E11.5 (TM11.5) and visualized for nucleus-localized beta-galactosidase reporter

G1CN_TM12.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N3) that was birthdate tagged at E12.5 (TM12.5) and visualized for membrane-localized GFP reporter

G1CN_TM12.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:N3) that was birthdate tagged at E12.5 (TM12.5) and visualized for nucleus-localized beta-galactosidase reporter

G1CN_TM13.5_G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E13.5 (TM13.5) and visualized for membrane-localized GFP reporter

G1CN_TM13.5_L

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

brain sections of a P7 mouse (ID:1) that was birthdate tagged at E13.5 (TM13.5) and visualized for nucleus-localized beta-galactosidase reporter