SSBD:database

296-Kawabata-MouseBrainShape/ImageProcessingResult_D4AN_TM12.5_G

Author reviewed
BDML file for segmentation results of brain contours and tagged neurons for all images of P7 mouse brains (D4AN_TM12.5_G dataset) that was neurogenic-tagged at E12.5 and was visualied for membrane-localized GFP reporter (G)
SSBD:OMERO.gallery (Project) SSBD:OMERO (Project) BDML 4D Viewer
SSBD:downloads
Project
296-Kawabata-MouseBrainShape
Dataset ID
ImageProcessingResult_D4AN_TM12.5_G
Kind
Quantitative data
Title
BDML file for segmentation results of brain contours and tagged neurons for all images of P7 mouse brains (D4AN_TM12.5_G dataset) that was neurogenic-tagged at E12.5 and was visualied for membrane-localized GFP reporter (G)
Description
segmentation results of brain contours and tagged neurons for all images of P7 mouse brains (D4AN_TM12.5_G dataset) that was neurogenic-tagged at E12.5 and was visualied for membrane-localized GFP reporter (G)
File or Folder
ImageProcessingResult_D4AN_TM12.5_G_bdml3.0.zip
File Formats
BDML/BD5
File Separation Method
coronal sections from anterior to posterior direction
Source
-
X-scale
1.0 micrometer/pixel
Y-scale
1.0 micrometer/pixel
Z-scale
20 micrometer/slice
T-scale
-
Local ID
ImageProcessingResult_D4AN_TM12.5_G
Based On
Experiment
BD5
ImageProcessingResult_D4AN_TM12.5_G_bd5.h5
dblink
http://ssbd.riken.jp/neurogt/
Organism
Mus musculus ( NCBITaxon:10090 )
Strain
C57BL/6 Neurod4^{CreER}(D4A); Tau^{mGFP-nLacZ}
Cell line
-
Biological Process
nervous system development ( GO:0007399 )
Cellular Component
plasma membrane ( GO:0005886 )
neuron projection ( GO:0043005 )
Medical Subject Headings
neurons ( MeSH:D009474 )
axons ( MeSH:D001369 )
brain ( MeSH:D001921 )
mice transgenic ( MeSH:D008822 )
immunohistochemistry ( MeSH:D007150 )
Method involved in biological imaging
bright-field microscopy ( FBbi:00000243 )
chemically fixed tissue ( FBbi:00000002 )
cryostat-sectioned tissue ( FBbi:00000027 )
horseradish peroxidase ( FBbi:00000138 )
Project gallery
https://ssbd.riken.jp/omero/gallery/show_project/728/
Project
https://ssbd.riken.jp/omero/webclient/?show=project-728
BDML
BDML file for segmentation results of brain contours and tagged neurons for all images of P7 mouse brain (D4AN_TM12.5_G dataset) that was neurogenic-tagged at E12.5 and was visualized for membrane-localized GFP reporter (G)
4D Viewer
https://ssbd.riken.jp/webbd5viewer/viewerBD5.html?project=296-Kawabata-MouseBrainShape&file=ImageProcessingResult_D4AN_TM12.5_G_bd5
downloads
https://ssbd.riken.jp/data/296-Kawabata-MouseBrainShape/

Sibling records

Image data
ImageProcessingResult_D4AN_TM12.5_G
-