SSBD:database

296-Kawabata-MouseBrainShape/ImageProcessingResult_D1BN_TM14.5_L

Author reviewed

BDML file for segmentation results of brain contours and tagged neurons for all images of P7 mouse brains (D1BN_TM14.5_L dataset) that was neurogenic-tagged at E14.5 and was visualied for nucleus-localized beta-galactosidase reporter (L)

BDML 4D Viewer

SSBD:downloads

Project

296-Kawabata-MouseBrainShape

Dataset ID

ImageProcessingResult_D1BN_TM14.5_L

Kind

Quantitative data

Title

Description

segmentation results of brain contours and tagged neurons for all images of P7 mouse brains (D1BN_TM14.5_L dataset) that was neurogenic-tagged at E14.5 and was visualied for nucleus-localized beta-galactosidase reporter (L)

File or Folder

ImageProcessingResult_D1BN_TM14.5_L_bdml3.0.zip

File Formats

BDML/BD5

File Separation Method

coronal sections from anterior to posterior direction

Source

X-scale

1.0 micrometer/pixel

Y-scale

1.0 micrometer/pixel

Z-scale

20 micrometer/slice

T-scale

Local ID

ImageProcessingResult_D1BN_TM14.5_L

Based On

Experiment

BD5

ImageProcessingResult_D1BN_TM14.5_L_bd5.h5

dblink

http://ssbd.riken.jp/neurogt/

Organism

Mus musculus ( NCBITaxon:10090 )

Strain

C57BL/6 Neurod1^{CreER}(D1B); Tau^{mGFP-nLacZ}

Cell line

Biological Process

nervous system development ( GO:0007399 )

Cellular Component

plasma membrane ( GO:0005886 )

neuron projection ( GO:0043005 )

Medical Subject Headings

neurons ( MeSH:D009474 )

axons ( MeSH:D001369 )

brain ( MeSH:D001921 )

mice transgenic ( MeSH:D008822 )

immunohistochemistry ( MeSH:D007161 )

Method involved in biological imaging

bright-field microscopy ( FBbi:00000243 )

chemically fixed tissue ( FBbi:00000002 )

cryostat-sectioned tissue ( FBbi:00000027 )

horseradish peroxidase ( FBbi:00000138 )

BDML

BDML file for segmentation results of brain contours and tagged neurons for all images of P7 mouse brain (D1BN_TM14.5_L dataset) that was neurogenic-tagged at E14.5 and was visualized for nucleus-localized beta-galactosidase reporter (L)

4D Viewer

https://ssbd.riken.jp/webbd5viewer/viewerBD5.html?project=296-Kawabata-MouseBrainShape&file=ImageProcessingResult_D1BN_TM14.5_L_bd5

downloads

https://ssbd.riken.jp/data/296-Kawabata-MouseBrainShape/

Sibling records

Image data

ImageProcessingResult_D1BN_TM14.5_L