SSBD:database

6-Arjunan-MolDyn

Author reviewed
SSBD:downloads
Project name
6-Arjunan-MolDyn
Release date
2013-09-02
Update date
2018-11-15
Pre-release URL
-
Project title
-
License
CC BY-NC-SA
Method summary
See details in Arjunan et al. (2010) Syst Synth Biol., 4(1): 35-53.
PubMed URL
https://www.ncbi.nlm.nih.gov/pubmed/20012222
Kind
Quantitative data
Organism
Escherichia coli ( NCBITaxon:562 )
Total
3 files / 205.1 MB
Image datasets
zipped 0 files / 0 bytes, raw image 0 files / 0 bytes, total 0 files / 0 bytes
Quantitative datasets
zipped 1 files / 14.3 MB, raw bdml 2 files / 190.8 MB, total 3 files / 205.1 MB
Image datasets
0
Quantitative datasets
1
Strain
-
Datatype
single molecule dynamics
Basedon
Simulation
XYZ-scale
XY: 1.0 micrometer/pixel, Z: 1.0 micrometer/frame
T-scale
0.5 microsecond for each time interval
dblink
None
External links
None
Source
https://github.com/ecell/spatiocyte/blob/master/samples/2010.arjunan.syst.synth.biol/2010.arjunan.syst.synth.biol.wt.em
BDML
http://ssbd.qbic.riken.jp/data/6-Arjunan-MolDyn/bdml/Eco_MinE_AS_bdml3.0.zip
PDPML
http://ssbd.qbic.riken.jp/data/pdpml/6-Arjunan-MolDyn_pdpml1.0.xml
Experiment type
Other
Microscope type
Other
Acquisition mode
Other
Contrast method
Other
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Biological Process
cellular protein localization ( GO:0034613 )
Cellular Component
-
People
Contact
Satya Nanda Vel Arjunan
Keio University
Institute for Advanced Biosciences
-
14-1, Baba-cho, Tsuruoka Yamagata 997-0035 Japan
Contributors
Satya Nanda Vel Arjunan, Masaru Tomita
downloads
https://ssbd.riken.jp/data/6-Arjunan-MolDyn/

Dataset List

Thumbnail
Dataset
Organism
Kind / Links
Eco_MinE_AS
Escherichia coli ( NCBITaxon:562 )
Quantitative data BDML
BDML file for quantitative information about single molecule dynamics of E. coli wild-type