SSBD:database

5-Keller-FishEmbryo

Author reviewed
SSBD:downloads
Project name
5-Keller-FishEmbryo
Release date
2013-10-03
Update date
2018-11-15
Pre-release URL
-
Project title
-
License
CC BY-NC-SA
Method summary
See details in Keller et al. (2008) Science, 322(5904): 1065-1069.
PubMed URL
https://www.ncbi.nlm.nih.gov/pubmed/18845710
Kind
Quantitative data
Organism
Danio rerio ( NCBITaxon:7955 )
Total
21 files / 57.3 GB
Image datasets
zipped 0 files / 0 bytes, raw image 0 files / 0 bytes, total 0 files / 0 bytes
Quantitative datasets
zipped 7 files / 9.1 GB, raw bdml 14 files / 48.2 GB, total 21 files / 57.3 GB
Image datasets
0
Quantitative datasets
7
Strain
-
Datatype
nuclear positions
Basedon
Experiment
XYZ-scale
XY: 1.0 micrometer/pixel, Z: 1.0 micrometer/frame
T-scale
90 second for each time interval
dblink
http://www.embl.de/digitalembryo/fish.html
External links
None
PDPML
http://ssbd.qbic.riken.jp/data/pdpml/5-Keller-FishEmbryo_pdpml1.0.xml
Experiment type
TimeLapse
Microscope type
ConfocalMicroscope
Acquisition mode
Other
Contrast method
Other
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Biological Process
embryo development ( GO:0009790 )
Cellular Component
nucleus ( GO:0005634 )
People
Contact
Philipp J. Keller
European Molecular Biology Laboratory
Cell Biology and Biophysics Unit
-
-
Contributors
Philipp J. Keller, Annette D. Schmidt, Joachim Wittbrodt, Ernst H.K. Stelzer
downloads
https://ssbd.riken.jp/data/5-Keller-FishEmbryo/

Dataset List

Thumbnail
Dataset
Organism
Kind / Links
zebrafish_animal_a.mat
Danio rerio ( NCBITaxon:7955 )
Quantitative data BDML
BDML file for reconstruction of the zebrafish animal hemisphere (A)
zebrafish_animal_b.mat
Danio rerio ( NCBITaxon:7955 )
Quantitative data BDML
BDML file for reconstruction of the zebrafish animal hemisphere (B)
zebrafish_animal_c.mat
Danio rerio ( NCBITaxon:7955 )
Quantitative data BDML
BDML file for reconstruction of the zebrafish animal hemisphere (C)
zebrafish_dorsal.mat
Danio rerio ( NCBITaxon:7955 )
Quantitative data BDML
BDML file for reconstruction of the zebrafish dorsal hemisphere
zebrafish_in_toto_mzoep.mat
Danio rerio ( NCBITaxon:7955 )
Quantitative data BDML
BDML file for in toto reconstruction of zebrafish MZoep mutant development
zebrafish_in_toto_wt.mat
Danio rerio ( NCBITaxon:7955 )
Quantitative data BDML
BDML file for in toto reconstruction of zebrafish wild-type development
zebrafish_ventral.mat
Danio rerio ( NCBITaxon:7955 )
Quantitative data BDML
BDML file for reconstruction of the zebrafish ventral hemisphere