SSBD:database

48-Susaki-MouseBrainCUBIC thumbnail

48-Susaki-MouseBrainCUBIC

Author reviewed

SSBD:OMERO.gallery SSBD:OMERO

Project name

48-Susaki-MouseBrainCUBIC

Release date

2017-10-03

Update date

2018-11-15

Pre-release URL

-

Project title

-

License

CC BY

Method summary

See details in Susaki et al. (2014) Cell, 157(3): 726–739.

PubMed URL

https://www.ncbi.nlm.nih.gov/pubmed/24746791

Kind

Image data

Organism

Mus musculus ( NCBITaxon:10090 )

Total

11814 files / 202.7 GB

Image datasets

zipped 27 files / 85.7 GB, raw image 11787 files / 117.1 GB, total 11814 files / 202.7 GB

Quantitative datasets

zipped 0 files / 0 bytes, raw bdml 0 files / 0 bytes, total 0 files / 0 bytes

Image datasets

27

Quantitative datasets

0

Strain

-

Datatype

organ structure

Basedon

Experiment

XYZ-scale

XY: 5.16 micrometer/pixel, Z: 10 micrometer/slice

XY: 2.026 micrometer/pixel, Z: 4.989 micrometer/slice

XY: 2.209 micrometer/pixel, Z: 4.989 micrometer/slice

XY: 2.26 micrometer/pixel, Z: 1.98 micrometer/slice

T-scale

-

dblink

None

External links

None

Experiment type

Other

Microscope type

ConfocalMicroscope

Acquisition mode

LaserScanningConfocalMicroscopy

Contrast method

Fluorescence

Microscope model

-

Detector model

-

Objective model

-

Filter set

-

Biological Process

-

Cellular Component

-

People

Contact

Hiroki R Ueda

RIKEN

Quantitative Biology Center

Laboratory for Synthetic Biology

Contributors

Etsuo A. Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M. Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi, Takaya Abe, Hiroshi Kiyonari, Yoshihiro Shimizu, Atsushi Miyawaki, Hideo Yokota, Hiroki R. Ueda

OMERO.gallery

https://ssbd.riken.jp/omero/gallery/show_project/106/

OMERO

https://ssbd.riken.jp/omero/webclient/?show=project-106

downloads

https://ssbd.riken.jp/data/48-Susaki-MouseBrainCUBIC/

Dataset List

Thumbnail

Dataset

Organism

Kind / Links

48-Susaki-MouseBrainCUBIC/Fig3A_R26-pCAG-nuc-3xmKate2 thumbnail

Fig3A_R26-pCAG-nuc-3xmKate2

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of R26-pCAG-nuc-3 x mKate2 mouse brain

48-Susaki-MouseBrainCUBIC/Fig3C_H2B-mCherry thumbnail

Fig3C_H2B-mCherry

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of R26-H2B-mCherry mouse brain

48-Susaki-MouseBrainCUBIC/Fig3D_H2B-EGFP thumbnail

Fig3D_H2B-EGFP

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of R26-H2B-EGFP mouse brain

48-Susaki-MouseBrainCUBIC/Fig3E_Thy1-YFP-H thumbnail

Fig3E_Thy1-YFP-H

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of Thy1-YFP-H transgenic mouse brain

48-Susaki-MouseBrainCUBIC/Fig4B_Series055 thumbnail

Fig4B_Series055

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse

48-Susaki-MouseBrainCUBIC/Fig4B_Series072 thumbnail

Fig4B_Series072

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse

48-Susaki-MouseBrainCUBIC/Fig4C_CryDKO-CT12 thumbnail

Fig4C_CryDKO-CT12

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse

48-Susaki-MouseBrainCUBIC/Fig4C_CryDKO-CT18 thumbnail

Fig4C_CryDKO-CT18

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse

48-Susaki-MouseBrainCUBIC/Fig4C_CryDKO-CT24 thumbnail

Fig4C_CryDKO-CT24

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse

48-Susaki-MouseBrainCUBIC/Fig4C_CryDKO-CT30 thumbnail

Fig4C_CryDKO-CT30

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse

48-Susaki-MouseBrainCUBIC/Fig4C_WT-CT12 thumbnail

Fig4C_WT-CT12

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse

48-Susaki-MouseBrainCUBIC/Fig4C_WT-CT18 thumbnail

Fig4C_WT-CT18

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse

48-Susaki-MouseBrainCUBIC/Fig4C_WT-CT24 thumbnail

Fig4C_WT-CT24

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse

48-Susaki-MouseBrainCUBIC/Fig4C_WT-CT30 thumbnail

Fig4C_WT-CT30

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse

48-Susaki-MouseBrainCUBIC/Fig5_1310045_21-46-25 thumbnail

Fig5_1310045_21-46-25

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of CUBIC treatment and SYTO 16 nuclear staining of the marmoset hemisphere

48-Susaki-MouseBrainCUBIC/Fig6_131118_10-09-33 thumbnail

Fig6_131118_10-09-33

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain

48-Susaki-MouseBrainCUBIC/Fig6_131118_10-50-37 thumbnail

Fig6_131118_10-50-37

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain

48-Susaki-MouseBrainCUBIC/Fig6_131118_12-51-39 thumbnail

Fig6_131118_12-51-39

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain

48-Susaki-MouseBrainCUBIC/Fig6_131118_13-39-52 thumbnail

Fig6_131118_13-39-52

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain

48-Susaki-MouseBrainCUBIC/Fig6_131118_20-29-52 thumbnail

Fig6_131118_20-29-52

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain

48-Susaki-MouseBrainCUBIC/Fig6_131118_20-58-17 thumbnail

Fig6_131118_20-58-17

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain

48-Susaki-MouseBrainCUBIC/Fig6_131118_22-31-24 thumbnail

Fig6_131118_22-31-24

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain

48-Susaki-MouseBrainCUBIC/Fig6_131119_08-22-10 thumbnail

Fig6_131119_08-22-10

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain

48-Susaki-MouseBrainCUBIC/Fig6_131119_09-13-05 thumbnail

Fig6_131119_09-13-05

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain

48-Susaki-MouseBrainCUBIC/Fig6_131119_09-46-00 thumbnail

Fig6_131119_09-46-00

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain

48-Susaki-MouseBrainCUBIC/Fig6_131119_11-38-20 thumbnail

Fig6_131119_11-38-20

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain

48-Susaki-MouseBrainCUBIC/Fig6_131119_12-13-00 thumbnail

Fig6_131119_12-13-00

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain