SSBD:database

48-Susaki-MouseBrainCUBIC thumbnail

48-Susaki-MouseBrainCUBIC

Author reviewed
SSBD:OMERO.gallery SSBD:OMERO
SSBD:downloads
Project name
48-Susaki-MouseBrainCUBIC
Release date
2017-10-03
Update date
2018-11-15
Pre-release URL
-
Project title
-
License
CC BY
Method summary
See details in Susaki et al. (2014) Cell, 157(3): 726–739.
PubMed URL
https://www.ncbi.nlm.nih.gov/pubmed/24746791
Kind
Image data
Organism
Mus musculus ( NCBITaxon:10090 )
Total
11814 files / 202.7 GB
Image datasets
zipped 27 files / 85.7 GB, raw image 11787 files / 117.1 GB, total 11814 files / 202.7 GB
Quantitative datasets
zipped 0 files / 0 bytes, raw bdml 0 files / 0 bytes, total 0 files / 0 bytes
Image datasets
27
Quantitative datasets
0
Strain
-
Datatype
organ structure
Basedon
Experiment
XYZ-scale
XY: 5.16 micrometer/pixel, Z: 10 micrometer/slice
XY: 2.026 micrometer/pixel, Z: 4.989 micrometer/slice
XY: 2.209 micrometer/pixel, Z: 4.989 micrometer/slice
XY: 2.26 micrometer/pixel, Z: 1.98 micrometer/slice
T-scale
-
dblink
None
External links
None
Experiment type
Other
Microscope type
ConfocalMicroscope
Acquisition mode
LaserScanningConfocalMicroscopy
Contrast method
Fluorescence
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Biological Process
-
Cellular Component
-
People
Contact
Hiroki R Ueda
RIKEN
Quantitative Biology Center
Laboratory for Synthetic Biology
1-3 Yamadaoka, Suita, Osaka, 565-0871, Japan
Contributors
Etsuo A. Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M. Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi, Takaya Abe, Hiroshi Kiyonari, Yoshihiro Shimizu, Atsushi Miyawaki, Hideo Yokota, Hiroki R. Ueda
OMERO.gallery
https://ssbd.riken.jp/omero/gallery/show_project/106/
OMERO
https://ssbd.riken.jp/omero/webclient/?show=project-106
downloads
https://ssbd.riken.jp/data/48-Susaki-MouseBrainCUBIC/

Dataset List

Thumbnail
Dataset
Organism
Kind / Links
48-Susaki-MouseBrainCUBIC/Fig3A_R26-pCAG-nuc-3xmKate2 thumbnail
Fig3A_R26-pCAG-nuc-3xmKate2
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of R26-pCAG-nuc-3 x mKate2 mouse brain
48-Susaki-MouseBrainCUBIC/Fig3C_H2B-mCherry thumbnail
Fig3C_H2B-mCherry
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of R26-H2B-mCherry mouse brain
48-Susaki-MouseBrainCUBIC/Fig3D_H2B-EGFP thumbnail
Fig3D_H2B-EGFP
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of R26-H2B-EGFP mouse brain
48-Susaki-MouseBrainCUBIC/Fig3E_Thy1-YFP-H thumbnail
Fig3E_Thy1-YFP-H
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of Thy1-YFP-H transgenic mouse brain
48-Susaki-MouseBrainCUBIC/Fig4B_Series055 thumbnail
Fig4B_Series055
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse
48-Susaki-MouseBrainCUBIC/Fig4B_Series072 thumbnail
Fig4B_Series072
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse
48-Susaki-MouseBrainCUBIC/Fig4C_CryDKO-CT12 thumbnail
Fig4C_CryDKO-CT12
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse
48-Susaki-MouseBrainCUBIC/Fig4C_CryDKO-CT18 thumbnail
Fig4C_CryDKO-CT18
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse
48-Susaki-MouseBrainCUBIC/Fig4C_CryDKO-CT24 thumbnail
Fig4C_CryDKO-CT24
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse
48-Susaki-MouseBrainCUBIC/Fig4C_CryDKO-CT30 thumbnail
Fig4C_CryDKO-CT30
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse
48-Susaki-MouseBrainCUBIC/Fig4C_WT-CT12 thumbnail
Fig4C_WT-CT12
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse
48-Susaki-MouseBrainCUBIC/Fig4C_WT-CT18 thumbnail
Fig4C_WT-CT18
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse
48-Susaki-MouseBrainCUBIC/Fig4C_WT-CT24 thumbnail
Fig4C_WT-CT24
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse
48-Susaki-MouseBrainCUBIC/Fig4C_WT-CT30 thumbnail
Fig4C_WT-CT30
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Immunohistochemistry (3D-IHC) images of suprachiasmatic nucleus (SCN) and paraventricular nucleus (PVM) regions of R26-H2B-EGFP mouse
48-Susaki-MouseBrainCUBIC/Fig5_1310045_21-46-25 thumbnail
Fig5_1310045_21-46-25
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of CUBIC treatment and SYTO 16 nuclear staining of the marmoset hemisphere
48-Susaki-MouseBrainCUBIC/Fig6_131118_10-09-33 thumbnail
Fig6_131118_10-09-33
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain
48-Susaki-MouseBrainCUBIC/Fig6_131118_10-50-37 thumbnail
Fig6_131118_10-50-37
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain
48-Susaki-MouseBrainCUBIC/Fig6_131118_12-51-39 thumbnail
Fig6_131118_12-51-39
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain
48-Susaki-MouseBrainCUBIC/Fig6_131118_13-39-52 thumbnail
Fig6_131118_13-39-52
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain
48-Susaki-MouseBrainCUBIC/Fig6_131118_20-29-52 thumbnail
Fig6_131118_20-29-52
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain
48-Susaki-MouseBrainCUBIC/Fig6_131118_20-58-17 thumbnail
Fig6_131118_20-58-17
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain
48-Susaki-MouseBrainCUBIC/Fig6_131118_22-31-24 thumbnail
Fig6_131118_22-31-24
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain
48-Susaki-MouseBrainCUBIC/Fig6_131119_08-22-10 thumbnail
Fig6_131119_08-22-10
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain
48-Susaki-MouseBrainCUBIC/Fig6_131119_09-13-05 thumbnail
Fig6_131119_09-13-05
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain
48-Susaki-MouseBrainCUBIC/Fig6_131119_09-46-00 thumbnail
Fig6_131119_09-46-00
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain
48-Susaki-MouseBrainCUBIC/Fig6_131119_11-38-20 thumbnail
Fig6_131119_11-38-20
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain
48-Susaki-MouseBrainCUBIC/Fig6_131119_12-13-00 thumbnail
Fig6_131119_12-13-00
Mus musculus ( NCBITaxon:10090 )
Image data omero.gallery omero
Light-sheet fluorescence microscopy (LSFM) images of Arc-dVenus transgenic mouse brain