SSBD:database

47-Noguchi-CellDyn

Author reviewed

SSBD:OMERO.gallery SSBD:OMERO

SSBD:downloads

Project name

47-Noguchi-CellDyn

Release date

2018-11-14

Update date

Pre-release URL

Project title

License

CC BY

Method summary

See details in Noguchi et al. (2015) Cell Rep, 13(12): 2679–2686.

PubMed URL

https://www.ncbi.nlm.nih.gov/pubmed/26711336

Kind

Image data

Organism

Mus musculus ( NCBITaxon:10090 )

Total

79 files / 151.0 GB

Image datasets

zipped 39 files / 60.8 GB, raw image 40 files / 90.2 GB, total 79 files / 151.0 GB

Quantitative datasets

zipped 0 files / 0 bytes, raw bdml 0 files / 0 bytes, total 0 files / 0 bytes

Image datasets

Quantitative datasets

Strain

Datatype

cell dynamics

Basedon

Experiment

XYZ-scale

XY: 0.830 micrometer/pixel, Z: NA

XY: 1.325 micrometer/pixel, Z: 6.5 micrometer/pixel

XY: 1.656 micrometer/pixel, Z: 11.9 micrometer/pixel

XY: 0.415 micrometer/pixel, Z: NA

XY: 1.656 micrometer/pixel, Z: 17.179 micrometer/pixel

XY: 0.664 micrometer/pixel, Z: 2.5 micrometer/pixel

XY: 0.489 micrometer/pixel, Z: 3.0 micrometer/pixel

XY: 0.033 micrometer/pixel, Z: 0.375 micrometer/pixel

XY: 0.636 micrometer/pixel, Z: 6.0 micrometer/pixel

XY: 0.636 micrometer/pixel, Z: 7.0 micrometer/pixel

XY: 0.196 micrometer/pixel, Z: NA

XY: 0.461 micrometer/pixel, Z: NA

XY: 0.828 micrometer/pixel, Z: 7.0 micrometer/pixel

XY: 0.828 micrometer/pixel, Z: 6.0 micrometer/pixel

XY: 1.136 micrometer/pixel, Z: 6.5 micrometer/pixel

XY: 1.325 micrometer/pixel, Z: 6.0 micrometer/pixel

XY: 0.414 micrometer/pixel, Z: 2.5 micrometer/pixel

XY: 0.496 micrometer/pixel, Z: 2.5 micrometer/pixel

XY: 0.132 micrometer/pixel, Z: NA

T-scale

30 minute

dblink

None

External links

None

Experiment type

Microscope type

ConfocalMicroscope

Acquisition mode

LaserScanningConfocalMicroscopy

Contrast method

Fluorescence

Microscope model

Detector model

Objective model

Filter set

Biological Process

Cellular Component

People

Contact

Masafumi Noguchi, Mitsuru Morimoto

RIKEN

Center for Developmental Biology

Laboratory for Lung Development

2-2-3, Minatojima-minamimachi, Chuo-ku, Kobe 650-0047 Japan

Contributors

Masafumi Noguchi, Kenta Sumiyama, Mitsuru Morimoto

OMERO.gallery

https://ssbd.riken.jp/omero/gallery/show_project/171/

OMERO

https://ssbd.riken.jp/omero/webclient/?show=project-171

downloads

https://ssbd.riken.jp/data/47-Noguchi-CellDyn/

Dataset List

Thumbnail

Dataset

Organism

Kind / Links

Fig1A

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Microscopy image of immunohistochemistry of E18.5 mouse lung with anti-calcitonin gene-related peptide (CGRP)

Fig1B

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Two-photon microscopy images of co-immunostaining for GFP, Ascl1, and DAPI in E14.5 mouse lung

Fig1D

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of whole cranial lobes of SHHCre/+; R26RH2B-mCherry; RetEGFP/+ mouse lungs at E14.5

Fig1E

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of whole cranial lobes of SHHCre/+; R26RH2B-mCherry; RetEGFP/+ mouse lungs at E15.5

Fig1F

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of whole cranial lobes of SHHCre/+; R26RH2B-mCherry; RetEGFP/+ mouse lungs at E16.5

Fig2A

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Microscopy images of staining of Ascl1 in Econtrol mouse at E13.5

Fig2B

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Microscopy images of staining of Ascl1 in SHHCre/+; Hes1f/f mutant mouse at E13.5

Fig2E

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Microscopy images neuroepithelial body (NEB) mapping with the Hes1 deficient mouse lung at E16.5

Fig3A

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Microscopy images of 3D distribution of neuroendocrine (NE) cells in the Cr-V1 branch at E14.5 mouse

Fig3C

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Microscopy images of 3D distribution of neuroendocrine (NE) cells in the Cr-V1 branch at E15.5 mouse

Fig3E

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Microscopy images of 3D distribution of neuroendocrine (NE) cells in the Cr-V1 branch at E16.5 mouse

Fig3G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

A high-resolution 3D microscopy image of neuroendocrine (NE) cells on E14.5 mouse

Fig3H

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Microscopy images of staining of GFP with an E14.5 RetEGFP/+ mouse lung

Fig4B

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

4D microscopy image of a cultured lung of a SHHCre/+; R26RH2B-mCherry; RetEGFP/+ mouse

Fig4C

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

4D microscopy image of a cultured lung of a SHHCre/+; R26RH2B-mCherry; RetEGFP/+ mouse

Fig4D

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

4D microscopy image of a cultured lung of a SHHCre/+; R26RH2B-mCherry; RetEGFP/+ mouse

Fig4F

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

4D microscopy image of a cultured lung of a SHHCre/+; R26RH2B-mCherry; RetEGFP/+ mouse

Fig4G

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Microscopy images of staining with RET-EGFP, EGFP and Laminin of an E14.5 RetEGFP/+ mouse lung

FigS1B-1

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Co-staining of GFP and neuroendocrine (NE) cell markers Ascl1 and CGRP in RET-EGFP lungs at E14.5 mouse

FigS1B-2

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Co-staining of GFP and neuroendocrine (NE) cell markers Ascl1 and CGRP in RET-EGFP lungs at E18.5 mouse

FigS1B-3

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Co-staining of GFP and neuroendocrine (NE) cell markers Ascl1 and CGRP in RET-EGFP lungs at E18.5 mouse

FigS1D

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Microscopy image of immunohistochemistry for CGRP in E18.5 mouse control lungs

FigS1G-E14.5-2

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of the cranial lobes at E14.5 mouse

FigS1G-E14.5-3

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of the cranial lobes at E14.5 mouse

FigS1G-E15.5-2

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of the cranial lobes at E15.5 mouse

FigS1G-E15.5-3

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of the cranial lobes at E15.5 mouse

FigS1G-E16.5-2

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of the cranial lobes at E16.5 mouse

FigS1G-E16.5-3

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of the cranial lobes at E16.5 mouse

FigS3-E14.5-2

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of neuroendocrine (NE) cells at E14.5 mouse

FigS3-E14.5-3

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of neuroendocrine (NE) cells at E14.5 mouse

FigS3-E15.5-2

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of neuroendocrine (NE) cells at E15.5 mouse

FigS3-E15.5-3

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of neuroendocrine (NE) cells at E15.5 mouse

FigS3-E16.5-2

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of neuroendocrine (NE) cells at E16.5 mouse

FigS3-E16.5-3-1

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of neuroendocrine (NE) cells at E16.5 mouse

FigS3-E16.5-3-2

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

3D microscopy images of neuroendocrine (NE) cells at E16.5 mouse

FigS4-E14.5

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Microscopy images of PGP9.5, CXCR4 and N-cadherin in solitary NE cells at E14.5 mouse

FigS4-E15.5

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Microscopy images of PGP9.5, CXCR4 and N-cadherin in solitary NE cells at E15.5 mouse

FigS4-E18.5

Mus musculus ( NCBITaxon:10090 )

Image data omero.gallery omero

Microscopy images of PGP9.5, CXCR4 and N-cadherin in clustered neuroepithelial body (NEB) cells at E18.5 mouse