114-Shiura-MouseEmbryoDyn
Author reviewedProject name
114-Shiura-MouseEmbryoDyn
Release date
2019-11-20
Update date
-
Pre-release URL
http://ssbd.qbic.riken.jp/set/20190601/
Project title
RNA-FISH and immunofluorescence images of Xist/Tsix expression during peri-implantation embryoic development using whole-mount 3D RNA-FISH
License
Method summary
See details in Shiura et al. (2019) Sci Rep, 9(1): 3637.
PubMed URL
Kind
Image data
Organism
Mus musculus
(
NCBITaxon:10090
)
Total
750 files / 42.6 GB
Image datasets
zipped 179 files / 7.0 GB, raw image 179 files / 14.3 GB, total 358 files / 21.3 GB
Quantitative datasets
zipped 0 files / 0 bytes, raw bdml 0 files / 0 bytes, total 0 files / 0 bytes
Image datasets
50
Quantitative datasets
0
Strain
-
Datatype
X chromosome inactivation (XCI) dynamics
Basedon
Experiment
XYZ-scale
XY: 0.1660532 micrometer/pixel, Z: 0.8 micrometer/slice
XY: 0.2767553 micrometer/pixel, Z: 0.8 micrometer/slice
XY: 0.2197266 micrometer/pixel, Z: 0.7 micrometer/slice
XY: 0.1757813 micrometer/pixel, Z: 0.7 micrometer/slice
T-scale
-
dblink
None
External links
None
Experiment type
Immunofluorescence
Microscope type
ConfocalMicroscope
Acquisition mode
LaserScanningConfocalMicroscopy
Contrast method
Fluorescence
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Biological Process
gene expression
(
GO:0010467
)
,
dosage compensation by inactivation of X chromosome
(
GO:0009048
)
Cellular Component
necleus
(
GO:0005634
)
People
Contact
Kuniya Abe, Hirosuke Shiura
RIKEN
BioResource Research Center
Technology & Development Team for Mammalian Genome Dynamics,
3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074 Japan
Contributors
Hirosuke Shiura, Kuniya Abe
OMERO.gallery
Dataset List
Thumbnail
Dataset
Organism
Kind / Links
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E3.5
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E3.5
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E3.5
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E3.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E3.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E3.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E3.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.0
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.0
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.0
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.25
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.25
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.25
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.25
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.25
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.25
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.5
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.5
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.5
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E5.0
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E5.0
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E5.0
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E5.0
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E5.25
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E5.25
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E5.25
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E5.5
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E5.5
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E5.5
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E5.5
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E6.5
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E6.5
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E4.75 as an example of single optical sections
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse embryonic cell lineage at E5.5 as an example of single optical sections
Immunofluorescence confocal image of X-linkded genes Lamp2 expression pattern in the mouse embryonic cell lineage at E4.75
Immunofluorescence confocal image of X-linkded genes Lamp2 expression pattern in the mouse embryonic cell lineage at E4.75
Immunofluorescence confocal image of X-linkded genes Lamp2 expression pattern in the mouse embryonic cell lineage at E4.75
Immunofluorescence confocal image of X-linkded genes Pgk1 expression pattern in the mouse embryonic cell lineage at E4.75
Immunofluorescence confocal image of X-linkded genes Pgk1 expression pattern in the mouse embryonic cell lineage at E4.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse extraembryonic PE/VE lineage cells at E3.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse extraembryonic PE/VE lineage cells at E3.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse extraembryonic PE/VE lineage cells at E3.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse extraembryonic PE/VE lineage cells at E3.75
Immunofluorescence confocal image of Xist/Tsix expression patterns in the mouse extraembryonic PE/VE lineage cells at E4.0