SSBD:database

Dataset 11-Toyoshima-NeuAct/140919a_stack_1.45u

Author reviewed
SSBD:OMERO.gallery (Project) SSBD:OMERO (Project) Zallery (Project) BDML 4D Viewer
SSBD:downloads
Project name
11-Toyoshima-NeuAct
Release date
2016-05-20
Update date
2018-11-15
Pre-release URL
http://ssbd.qbic.riken.jp/set/20160501/
Project title
Quantitative information about neuronal nuclei in C. elegans adult
Contact name
Yu Toyoshima
Organization
The University of Tokyo
Department
Department of Biological Sciences
Laboratory
Iino Laboratory
License
CC BY-NC-SA
Contributors
Yu Toyoshima, Terumasa Tokunaga, Osamu Hirose, Manami Kanamori, Takayuki Teramoto, Moon Sun Jang, Sayuri Kuge, Takeshi Ishihara, Ryo Yoshida, Yuichi Iino
Method summary
See details in Toyoshima et al. (2016) PLoS Computational Biology, 12(6):e1004970
Paper(s)
File or Folder
140919a_stack_1.45u
Kind
Image data
Title
BDML file for quantitative information about neuronal nuclei in C. elegans (strain JN2101) adult extracted from time-lapse 3D multi-channel spinning disk confocal microscopy (SDCM) images
Description
-
Organism
Caenorhabditis elegans ( NCBITaxon:6239 )
Strain
None
Datatype
neuronal nuclear dynamics
Basedon
Experiment
LocalID
140919a_stack_1.45u
XYZ-scale
XY: 0.33 micrometer/pixel, Z: 1.4 micrometer/slice
T-scale
0.21 second for each time interval
dblink
None
External links
http://dx.doi.org/10.6084/m9.figshare.3184546
Source
None
BDML
None
PDPML
None
Experiment type
None
Microscope type
None
Acquisition mode
None
Contrast method
None
Microscope model
None
Detector model
None
Objective model
None
Filter set
None
Sample
-
Dye
-
Clearing
-
Biological Process
-
Cellular Component
nucleus ( GO:0005634 )
Project gallery
https://ssbd.riken.jp/omero/gallery/show_project/4/
Project
https://ssbd.riken.jp/omero/webclient/?show=project-4
Zallery
https://openssbd.github.io/zallery/#/study/ssbd-database-000011
Documents
BDML file for quantitative information about neuronal nuclei in C. elegans (strain JN2101) adult extracted from time-lapse 3D multi-channel spinning disk confocal microscopy (SDCM) images
4D Viewer
https://ssbd.riken.jp/webbd5viewer/viewerBD5.html?project=11-Toyoshima-NeuAct&file=140919a_stack_1.45u_bd5

Sibling records

Image data
140919a_stack_1.45u
Time-lapse 3D multi-channel spinning disk confocal microscopy (SDCM) images about neuronal nuclei in C. elegans (strain JN2101) adult
downloads
https://ssbd.riken.jp/data/11-Toyoshima-NeuAct/?dataset=140919a_stack_1.45u