Summary of ssbd-repos-000451

SSBD:database
URL

Name
ssbd-repos-000451 (451-Hitora-Neopetromin)
URL
DOI
-

Title
The shape of vacuole and F-actin in tobacco BY-2 cells treated with neopetromin, a newly found peptide
Description

HPLC-MS analysis revealed the presence of an
unreported peptide in the extract of the marine sponge Neopetrosia
sp. Its structure was determined as a tripeptide, named
neopetromin (1), composed of two tyrosine and one tryptophan
residues with a heteroaromatic C−N cross-link between side
chains. The absolute configuration of amino acids was determined
using Marfey’s method after ozonolysis and hydrolysis of 1.
Compound 1 promoted vacuole fragmentation in an actin-
independent manner in tobacco BY-2 cells.

Submited Date
-
Release Date
2025-11-28
Updated Date
-
License
Funding information
-
File formats
Data size
619.3 MB

Organism
Nicotiana tabacum
Strain
-
Cell Line
TBY-2 cell
Genes
-
Proteins
-

GO Molecular Function (MF)
NA
GO Biological Process (BP)
negative regulation of actin filament polymerization
GO Cellular Component (CC)
vacuole, actin cytoskeleton
Study Type
NA
Imaging Methods
confocal microscopy

Method Summary
-
Related paper(s)

Yuki Hitora, Ahmed H El-Desoky, Yusaku Sadahiro, Ai Sejiyama, Amiri Kinoshita, Yuji Ise, Esther D Angkouw, Remy E P Mangindaan, Takumi Higaki, Sachiko Tsukamoto (2024) Neopetromin, a Cyclic Tripeptide with a C-N Cross-Link, from the Marine Sponge Neopetrosia sp., That Causes Vacuole Fragmentation in Tobacco BY-2 Cells., Journal of natural products

Published in 2024 Mar 19 (Electronic publication in March 19, 2024, midnight )

(Abstract) HPLC-MS analysis revealed the presence of an unreported peptide in the extract of the marine sponge Neopetrosia sp. Its structure was determined as a tripeptide, named neopetromin (1), composed of two tyrosine and one tryptophan residues with a heteroaromatic C-N cross-link between side chains. The absolute configuration of amino acids was determined using Marfey's method after ozonolysis and hydrolysis of 1. Compound 1 promoted vacuole fragmentation in an actin-independent manner in tobacco BY-2 cells.

Contact(s)
Sachiko Tsukamoto, Yuki Hitora
Organization(s)
Kumamoto University, Kumamoto University , Department of Natural Medicines, Graduate School of Pharmaceutical Sciences, Department of Natural Medicines, Graduate School of Pharmaceutical Sciences , Department of Natural Medicines, Graduate School of Pharmaceutical Sciences, Department of Natural Medicines, Graduate School of Pharmaceutical Sciences
Image Data Contributors
Quantitative Data Contributors

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