Summary of ssbd-repos-000129

SSBD:database
URL

Name
ssbd-repos-000129 (129-Komatsu-ERKBiosensorActivity)
URL
DOI
-

Title
Timelapse images and BDML file for quantitative information about the extracellular signal-regulated kinase (ERK) biosensor activity in HeLa cells, or 4T1 cancer cells or the transgenic mice
Description
-
Submited Date
-
Release Date
2021-09-30
Updated Date
-
License
Funding information
-
File formats
Data size
6.4 GB

Organism
Mus musculus
Strain
-
Cell Line
4T1 cell, HeLa cell
Genes
-
Proteins
Cry2

GO Molecular Function (MF)
NA
GO Biological Process (BP)
activation of MAPERK kinase
GO Cellular Component (CC)
plasma membrane
Study Type
Intestines/cytology, Intestines, Time-Lapse Imaging, Transgenic, Cell Culture Techniques, MAP Kinase Signaling System, Mice, Epithelial Cells/metabolism, Gene Expression Profiling, Neoplastic, Neoplastic/genetics, Fluorescence, Extracellular Signal-Regulated MAP Kinases/genetics, Organoids, Inbred C57BL (MeSH UniqMeSH Unique ID:ue ID:D008810), Time-Lapse Imaging/methods, Animals, Epithelial Cells, MAP Kinase Signaling System/genetics, Organoids/metabolism, Microscopy, Organoids/cytology, Multiphoton, Extracellular Signal-Regulated MAP Kinases/metabolism, Extracellular Signal-Regulated MAP Kinases, Kinetics, Cell Transformation
Imaging Methods
time lapse microscopy

Method Summary
-
Related paper(s)

Naoki Komatsu, Kenta Terai, Ayako Imanishi, Yuji Kamioka, Kenta Sumiyama, Takashi Jin, Yasushi Okada, Takeharu Nagai, Michiyuki Matsuda (2018) A platform of BRET-FRET hybrid biosensors for optogenetics, chemical screening, and in vivo imaging., Scientific reports, Volume 8, Number 1, pp. 8984

Published in 2018 Jun 12 (Electronic publication in June 12, 2018, midnight )

(Abstract) Genetically encoded biosensors based on the principle of Forster resonance energy transfer comprise two major classes: biosensors based on fluorescence resonance energy transfer (FRET) and those based on bioluminescence energy transfer (BRET). The FRET biosensors visualize signaling-molecule activity in cells or tissues with high resolution. Meanwhile, due to the low background signal, the BRET biosensors are primarily used in drug screening. Here, we report a protocol to transform intramolecular FRET biosensors to BRET-FRET hybrid biosensors called hyBRET biosensors. The hyBRET biosensors retain all properties of the prototype FRET biosensors and also work as BRET biosensors with dynamic ranges comparable to the prototype FRET biosensors. The hyBRET biosensors are compatible with optogenetics, luminescence microplate reader assays, and non-invasive whole-body imaging of xenograft and transgenic mice. This simple protocol will expand the use of FRET biosensors and enable visualization of the multiscale dynamics of cell signaling in live animals.

Contact(s)
Michiyuki Matsuda
Organization(s)
Kyoto University , Graduate School of Biostudies , Laboratory of Bioimaging and Cell Signaling
Image Data Contributors
Quantitative Data Contributors

Download files
Download zipped files