ssbd-repos-000427

Histological analysis using human abdominal skin tissue including hair follicles
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Name
ssbd-repos-000427
URL
DOI

Project metadata

Title
Histological analysis using human abdominal skin tissue including hair follicles
Description
The hair cycle is a valuable model for studying tissue remodeling processes in adult mammals. Time-course single-cell transcriptomics offers a powerful approach for characterizing changes in cellular states and interactions; however, its application in human tissues remains challenging. Here, we performed single-cell RNA sequencing on 19 human skin tissues, each containing a single hair follicle. We reconstructed a pseudotemporal progression of the hair cycle—termed the “pseudo-hair cycle”—by computationally ordering samples according to their gene expression profiles. The pseudo-hair cycle delineates the continuum of gene expression changes occurring in 16 distinct epithelial and dermal cell populations throughout the hair cycle, revealing specific cellular states and interactions. We identified hair follicle keratinocytes, dermal sheath fibroblasts, vascular endothelial cells, and leukocytes as key contributors to tissue remodeling during catagen. Our study provides a high-resolution temporal dataset for investigating the dynamic molecular and cellular mechanisms underlying skin remodeling in humans.
Submission date
2025-03-25
Release date
2025-09-05
Update date
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License
Funding information
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File formats
Images of immunohistochemical staining or H&E staining (*.ndpi). Images of RNA-FISH (*.czi).

Storage

Data (repos)
830 files / 184.65 GiB
Bundle (zip)
23 files / 174.69 GiB

Related paper(s)

Persons

Name
Hironobu Fujiwara
Contact
Name
Jun Yokota
Imaging contributor
Name
Noriko Sanzen
Imaging contributor

Ontology terms

Organism
Homo sapiens
Strain
-
Cell line
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Molecular function
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Biological process
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Cellular component
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Medical subject heading
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Biological imaging method
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