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ssbd-repos-000236

Cell membrane images, restored images, and segmentation results of 52 C. elegans embryos.
Released Author submitted
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Repository

Name
ssbd-repos-000236
URL
https://ssbd.riken.jp/repository/236/
DOI
https://doi.org/10.24631/ssbd.repos.2022.06.236

Project metadata

Title
Cell membrane images, restored images, and segmentation results of 52 C. elegans embryos.
Description
We performed 3D timelapse imaging of 52 embryos, in which the cell membrane is labeled with green fluorescent protein (GFP), for two hours from the two-cell stage. An image restoration method based on deep learning was applied to improve the image quality. An image processing method called BCOMS (Biologically Constrained Optimization-based cell Membrane Segmentation) was applied and the cellular regions were segmented.
Submission date
2022-06-15
Release date
2022-06-30
Update date
2026-06-19
License
CC BY license
Funding information
-
File formats
TIFF

Storage

Data (repos)
2,388,712 files / 266.99 GiB
Bundle (zip)
208 files / 194.56 GiB
Related paper(s)

Persons

Name
Shuichi Onami
Contact
Name
Hatsumi Okada
Imaging contributor
Name
Yusuke Azuma
Quantitative data contributor

Ontology terms

Organism
Caenorhabditis elegans
Strain
OD95
Cell line
NA
Molecular function
NA
Biological process
Developmental process
Cellular component
Cell membrane
Medical subject heading
-
Biological imaging method
Spinning disk confocal microscopy

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