ssbd-repos-000173

Trans-scale imaging and analysis of cAMP signal waves generated by developing social amoebae
Released Author submitted

Repository

Name
ssbd-repos-000173
URL
DOI

Project metadata

Title
Trans-scale imaging and analysis of cAMP signal waves generated by developing social amoebae
Description
A dataset related to a manuscript "Cellular logics bringing symmetry breaking in spiral nucleation revealed by trans-scale imaging" Abstract Rotating spirals are a typical dynamic in signal relaying systems and are observed in neuronal seizures and cardiac fibrillations. Although spiral waves are inducible under artificial conditions, their mechanisms of spontaneous formation have long been elusive. Here, we investigated the development of a social amoeba, Dictyostelium discoideum, which self-organizes spiral waves of intercellular communication from an a non-signaling state. Trans-scale imaging of signaling dynamics in ~130,000 cells identified features essential for the initiation, selection, and maintenance of a spiral wave, for which so-called reentry, a classical hypothesis for cardiac fibrillation, plays a role. Experimental and computational analysis revealed that wave-scale heterogeneity of signaling ability arising from cell-scale heterogeneity collectively self-organizes reentrant circuits, through which unidirectional wave propagation is initiated by a few pacemaker cells.
Submission date
2021-05-10
Release date
2021-05-26
Update date
2021-09-24
License
Funding information
-
File formats
TIF, nd2

Storage

Data (repos)
2,769 files / 308.62 GiB
Bundle (zip)
7 files / 33.72 GiB

Related paper(s)

Persons

Name
Kazuki Horikawa
Contact
Name
Taishi Kakizuka
Imaging contributor
Name
Taro Ichimura
Imaging contributor
Name
Aya Ichiraku
Imaging contributor
Name
Takeharu Nagai
Imaging contributor
Name
Yusuke Hara
Quantitative data contributor
Name
Taishi Kakizuka
Quantitative data contributor
Name
Yusaku Ohta
Quantitative data contributor
Name
Asuka Mukai
Quantitative data contributor
Name
Yoshiyuki Arai
Quantitative data contributor
Name
Kazuki Horikawa
Quantitative data contributor

Ontology terms

Organism
Dictyostelium discoideum, Computer simulation
Strain
-
Cell line
Ax2 (transformed with pDM304_Red-FL2 and pDM358_Red-FL2)
Molecular function
-
Biological process
-
Cellular component
-
Medical subject heading
-
Biological imaging method
Timelapse, Trans-scale imaging

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