Summary of 378-Minegishi-MetastaticNiche

SSBD:database
SSBD:database URL
Title
Fluorescent labeling of cell-cell interaction using sGRAPHIC
Description
-
Relase date
2024-12-23
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
3 ( Image datasets: 3, Quantitative data datasets: 0 )
Size of Datasets
1.2 GB ( Image datasets: 1.2 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Cell lines(s)
MC-38 cell, NIH-3T3 cell, EO771, NIH-3T3 cell, MC-38 cell, AML12 cell

Datatype
-
Molecular Function (MF)
Biological Process (BP)
cell-cell interaction
Cellular Component (CC)
cell-cell contact zone
Biological Imaging Method
confocal microscopy, time lapse microscopy
X scale
227.94 micrometer/pixel
Y scale
227.94 micrometer/pixel
Z scale
-
T scale
10 minutes per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Misa Minegishi, Takahiro Kuchimaru, Kaori Nishikawa, Takayuki Isagawa, Satoshi Iwano, Kei Iida, Hiromasa Hara, Shizuka Miura, Marika Sato, Shigeaki Watanabe, Akifumi Shiomi, Yo Mabuchi, Hiroshi Hamana, Hiroyuki Kishi, Tatsuyuki Sato, Daigo Sawaki, Shigeru Sato, Yutaka Hanazono, Atsushi Suzuki, Takahide Kohro, Tetsuya Kadonosono, Tomomi Shimogori, Atsushi Miyawaki, Norihiko Takeda, Hirofumi Shintaku, Shinae Kizaka-Kondoh, Satoshi Nishimura (2023) Secretory GFP reconstitution labeling of neighboring cells interrogates cell-cell interactions in metastatic niches., Nature communications, Volume 14, Number 1, pp. 8031

Published in 2023 Dec 5 (Electronic publication in Dec. 5, 2023, midnight )

(Abstract) Cancer cells inevitably interact with neighboring host tissue-resident cells during the process of metastatic colonization, establishing a metastatic niche to fuel their survival, growth, and invasion. However, the underlying mechanisms in the metastatic niche are yet to be fully elucidated owing to the lack of methodologies for comprehensively studying the mechanisms of cell-cell interactions in the niche. Here, we improve a split green fluorescent protein (GFP)-based genetically encoded system to develop secretory glycosylphosphatidylinositol-anchored reconstitution-activated proteins to highlight intercellular connections (sGRAPHIC) for efficient fluorescent labeling of tissue-resident cells that neighbor on and putatively interact with cancer cells in deep tissues. The sGRAPHIC system enables the isolation of metastatic niche-associated tissue-resident cells for their characterization using a single-cell RNA sequencing platform. We use this sGRAPHIC-leveraged transcriptomic platform to uncover gene expression patterns in metastatic niche-associated hepatocytes in a murine model of liver metastasis. Among the marker genes of metastatic niche-associated hepatocytes, we identify Lgals3, encoding galectin-3, as a potential pro-metastatic factor that accelerates metastatic growth and invasion.

Contact
Takahiro Kuchimaru, Hirofumi Shintaku , Jichi Medical University, RIKEN , Graduate School of Medicine, Cluster for Pioneering Research , Graduate School of Medicine, Cluster for Pioneering Research
Contributors
Misa Minegishi, Tomomi Shimogori, Atsushi Miyawaki, Hiroshi Hamana, Hiroyuki Kishi


Dataset List of 378-Minegishi-MetastaticNiche

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 11938
Dataset Kind Image data
Dataset Size 402.5 MB
4D view
SSBD:OMERO
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# 11939
Dataset Kind Image data
Dataset Size 395.7 MB
4D view
SSBD:OMERO
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# 11940
Datast ID FigS5_closeCancer
Dataset Kind Image data
Dataset Size 439.1 MB
4D view
SSBD:OMERO
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