Summary of 275-Sasaki-HistonDyn

SSBD:database
SSBD:database URL
Title
Time-course fulorescence images of dynamic changes in histone H3K9me3 in living cells.
Description
-
Relase date
2023-07-20
Updated date
2023-08-02
Errata in Datasets
Added pseudo color images for "Intensity Modulated Display" - Fig5D_HeLaS3_Hismet-HP1aFL, Added pseudo color images for "Intensity Modulated Display" - Fig5F_HeLaS3_Hismet-HP1aCSD
License
CC-BY
Kind
Image data based on Experiment
Number of Datasets
13 ( Image datasets: 13, Quantitative data datasets: 0 )
Size of Datasets
1.3 GB ( Image datasets: 1.3 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus, Homo sapiens, Chlorocebus pygerythrus
Cell lines(s)
MEF cell, HeLa S3 cell, COS-7 cell

Datatype
-
Molecular Function (MF)
H3K9me3 modified histone binding
Biological Process (BP)
histone H3-K9 trimethylation, mitotic cell cycle
Cellular Component (CC)
nucleosome, nucleus
Biological Imaging Method
FRET, FRAP, fluorescence microscopy
X scale
0.1080 micrometer/pixel, 0.1612 micrometer/pixel, 0.142 micrometer/pixel, 0.2485922 micrometer/pixel
Y scale
0.1080 micrometer/pixel, 0.1612 micrometer/pixel, 0.142 micrometer/pixel, 0.2485922 micrometer/pixel
Z scale
-
T scale
0.2 second of time interval, 900 second of time interval, 0.17 second of time interval, 300 second of time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Kazuki Sasaki, Michihiro Suzuki, Takeshi Sonoda, Tilman Schneider-Poetsch, Akihiro Ito, Motoki Takagi, Shinya Fujishiro, Yoshihiro Sohtome, Kosuke Dodo, Takashi Umehara, Hiroyuki Aburatani, Kazuo Shin-Ya, Yoichi Nakao, Mikiko Sodeoka, Minoru Yoshida (2022) Visualization of the dynamic interaction between nucleosomal histone H3K9 tri-methylation and HP1alpha chromodomain in living cells., Cell chemical biology, Volume 29, Number 7, pp. 1153-1161.e5

Published in 2022 Jul 21 (Electronic publication in June 20, 2022, midnight )

(Abstract) Histone lysine methylation is an epigenetic mark that can control gene expression. In particular, H3K9me3 contributes to transcriptional repression by regulating chromatin structure. Successful mitotic progression requires correct timing of chromatin structure changes, including epigenetic marks. However, spatiotemporal information on histone modifications in living cells remains limited. In this study, we created an FRET-based probe for live-cell imaging based on the HP1alpha chromodomain (HP1alphaCD), which binds to H3K9me3. The probe was incorporated into chromatin and the emission ratio decreased after treatment with histone methyltransferase inhibitors, indicating that it successfully traced dynamic changes in H3K9me3. Upon entry into mitosis, the probe's emission ratio transiently increased with a concomitant increase in H3K9me3, then exhibited a stepwise decrease, probably due to loss of HP1alphaCD binding caused by phosphorylation of H3S10 and demethylation of H3K9me3. This probe will be a useful tool for detecting dynamic changes in chromatin structure associated with HP1alpha.
(MeSH Terms)

Contact
Kazuki Sasaki, Minoru Yoshida , RIKEN, RIKEN , Center for Sustainable Resource Science, Center for Sustainable Resource Science , Chemical Genomics Research Group, Chemical Genomics Research Group
Contributors
Kazuki Sasaki


Dataset List of 275-Sasaki-HistonDyn

#
Dataset ID
Kind
Size
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SSBD:OMERO
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# 10752
Dataset Kind Image data
Dataset Size 427.7 MB
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SSBD:OMERO
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# 10753
Datast ID Fig4B_COS7_CFP-H3
Dataset Kind Image data
Dataset Size 3.3 MB
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SSBD:OMERO
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# 10754
Dataset Kind Image data
Dataset Size 3.3 MB
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SSBD:OMERO
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# 10755
Dataset Kind Image data
Dataset Size 3.3 MB
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SSBD:OMERO
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# 10756
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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# 10757
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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# 10758
Dataset Kind Image data
Dataset Size 287.1 MB
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SSBD:OMERO
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# 10759
Dataset Kind Image data
Dataset Size 97.6 MB
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SSBD:OMERO
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# 10760
Dataset Kind Image data
Dataset Size 38.2 MB
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SSBD:OMERO
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# 10761
Dataset Kind Image data
Dataset Size 331.4 MB
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SSBD:OMERO
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# 10762
Dataset Kind Image data
Dataset Size 126.3 MB
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SSBD:OMERO
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# 10763
Dataset Kind Image data
Dataset Size 19.0 MB
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SSBD:OMERO
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# 10764
Dataset Kind Image data
Dataset Size 35.2 MB
4D view
SSBD:OMERO
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