411-Yoshinari-BorateTransporter

Project

Title
3D-time-lapse images of vacuolar sorting of BOR1
Description
Plants maintain nutrient homeostasis by controlling the activities and abundance of nutrient transporters. In Arabidopsis thaliana, the borate (B) transporter BOR1 plays a role in the efficient translocation of B under low-B conditions. BOR1 undergoes polyubiquitination in the presence of sufficient B and is then transported to the vacuole via multivesicular bodies (MVBs) to prevent B accumulation in tissues at a toxic level. A previous study indicated that BOR1 physically interacts with mu subunits of adaptor protein complexes AP-3 and AP-4, both involved in vacuolar sorting pathways. In this study, we investigated the roles of AP-3 and AP-4 subunits in BOR1 trafficking in Arabidopsis. The lack of AP-3 subunits did not affect either vacuolar sorting or polar localization of BOR1-GFP, whereas the absence of AP-4 subunits resulted in a delay in high-B-induced vacuolar sorting without affecting polar localization. Super-resolution microscopy revealed a rapid sorting of BOR1-GFP into AP-4-positive spots in the trans-Golgi network (TGN) upon high-B supply. These results indicate that AP-4 is involved in sequestration of ubiquitinated BOR1 into a TGN-specific subdomain 'vacuolar-trafficking zone', and is required for efficient sorting of MVB and vacuole. Their findings have thus helped elucidate the rapid vacuolar sorting process facilitated by AP-4 in plant nutrient transporters.
License
CC BY 4.0
Released at
Oct. 20, 2025, midnight
Updated at
Funding
JSPS Grant-in-Aid for Scientific Research on Innovative Areas (19H05763 to J.T.), JSPS Grant-in-Aid for Scientific Research (A) (19H00934 to J.T.), JSPS Grant-in-Aid for Young Scientists (A) (26712007 to J.T.), Grant-in-Aid for Scientific Research(B) (22H02643 to T.U.), Grant-in-Aid for Challenging Research (Exploratory) (22K19327 to T.U.), JST CREST (JPMJCR20E5 to T.U.), JST PRESTO (JPMJPR22D9 to A.Y.) and Asahi Glass Foun- dation (to T.U.).
# of image datasets
11

Papers

Papers
Paper information: Yoshinari A, Shimizu Y, Hosokawa T, Nakano A, Uemura T, Takano J. Rapid Vacuolar Sorting of the Borate Transporter BOR1 Requires the Adaptor Protein Complex AP-4 in Arabidopsis. Plant Cell Physiol. 2024 Dec 6;65(11):1801-1811.,
Pubmed ID: 39215599,
DOI: https://doi.org/10.1093/pcp/pcae096,
URL: https://pubmed.ncbi.nlm.nih.gov/39215599/

Contacts

Contacts
Junpei Takano (Contact) , Graduate School of Life and Environmental Sciences , Osaka Prefecture University
Akira Yoshinari (Image data contributor) , Institute of Transformative Bio-Molecules (WPI-ITbM) , Nagoya University
Yutaro Shimizu (Image data contributor) , Center for Advanced Photonics , RIKEN
Takuya Hosokawa (Image data contributor) , Graduate School of Life and Environmental Sciences , Osaka Prefecture University

Biosamples

Organisms
Arabidopsis thaliana (NCBI:txid3702)
Strains
Col-0
Cells
epidermal cell (CL_0000362)
Cell lines

Ontologies

UBERON
Anatomical entities
GO: Biological processes
vesicle-mediated transport (GO:0016192)
GO: Cellular components
vacuole (GO:0005773)
vesicle membrane (GO:0012506)
plasma membrane (GO:0005886)
GO: Molecular functions
active borate transmembrane transporter activity (GO:0046715)

Genetics

Gene names
Protein names
AP-1 complex subunit mu-2 (O22715)
Boron transporter 1 (Q8VYR7)
Syntaxin-61 (Q946Y7)
AP-4 complex subunit mu (Q9SB50)
Genetic methods
Protein tags
Green fluorescent protein from Aequorea (FBbi:00000437)
iRFP713 (FBbi:00000516)
TagRFP (FBbi:00000516)
Probes
Oligo Primer
Genotype

Treatments

Reagent or Compound
Concentration
Fold Dilution
boric acid (CHEBI:33118)
100 micromolar (UO_0000064)
boric acid (CHEBI:33118)
100 micromolar (UO_0000064)
boric acid (CHEBI:33118)
100 micromolar (UO_0000064)
boric acid (CHEBI:33118)
100 micromolar (UO_0000064)
boric acid (CHEBI:33118)
100 micromolar (UO_0000064)
boric acid (CHEBI:33118)
100 micromolar (UO_0000064)
boric acid (CHEBI:33118)
100 micromolar (UO_0000064)
boric acid (CHEBI:33118)
100 micromolar (UO_0000064)
boric acid (CHEBI:33118)
100 micromolar (UO_0000064)
boric acid (CHEBI:33118)
100 micromolar (UO_0000064)
boric acid (CHEBI:33118)
100 micromolar (UO_0000064)

Imaging Methods

Dimensions
160x190x9x2x10, 160x190x9x2x10, 279x280x72x3x1, 279x280x72x3x1, 300x300x72x3x1, 300x300x72x3x1, 1024x1024x1x2x7,
X scales
NA, 0.156 micrometer,
Y scales
NA, 0.156 micrometer,
Z scales
NA,
T scales
NA, 4 seconds, 15 minutes,
Channels
2 channel, 3 channel,
Microscopy types
confocal microscopy (FBbi:00000251)
time lapse microscopy (FBbi:00000249)
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Body
Olympus-Evident IX73
Model
Light source
Detector
Objective
Olympus-Evident UPLSAPO100XS
Filter set
Dichroic
Body
Zeiss LSM800
Model
Light source
Detector
Objective
Zeiss LD C-Apochromat 40x/1.1 W
Filter set
Dichroic

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Arabidopsis thaliana (NCBI:txid3702)
/ Boron transporter 1 (Q8VYR7)
1024x1024x1x2x7
21MB
zip
Arabidopsis thaliana (NCBI:txid3702)
NA / Boron transporter 1 (Q8VYR7)
1024x1024x1x2x7
21MB
zip
Arabidopsis thaliana (NCBI:txid3702)
NA / Boron transporter 1 (Q8VYR7)
1024x1024x1x2x7
21MB
zip
Arabidopsis thaliana (NCBI:txid3702)
NA / Boron transporter 1 (Q8VYR7)
1024x1024x1x2x7
21MB
zip
Arabidopsis thaliana (NCBI:txid3702)
/ Boron transporter 1 (Q8VYR7)
1024x1024x1x2x7
21MB
zip
Arabidopsis thaliana (NCBI:txid3702)
NA / Boron transporter 1 (Q8VYR7)
1024x1024x1x2x7
21MB
zip
Arabidopsis thaliana (NCBI:txid3702)
/ Boron transporter 1 (Q8VYR7)
1024x1024x1x2x7
21MB
zip
Arabidopsis thaliana (NCBI:txid3702)
NA / Boron transporter 1 (Q8VYR7)
1024x1024x1x2x7
21MB
zip
Arabidopsis thaliana (NCBI:txid3702)
/ Boron transporter 1 (Q8VYR7) / AP-4 complex subunit mu (Q9SB50) / Syntaxin-61 (Q946Y7)
279x280x72x3x1, 279x280x72x3x1
32MB, 64MB
zip
Arabidopsis thaliana (NCBI:txid3702)
/ Boron transporter 1 (Q8VYR7) / AP-1 complex subunit mu-2 (O22715) / AP-4 complex subunit mu (Q9SB50)
300x300x72x3x1, 300x300x72x3x1
37MB, 74MB
zip
Arabidopsis thaliana (NCBI:txid3702)
/ Boron transporter 1 (Q8VYR7) / AP-4 complex subunit mu (Q9SB50)
160x190x9x2x10, 160x190x9x2x10
10MB, 21MB
zip