Dataset Fig5D_BOR1_SCLIM

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Project

Project
411-Yoshinari-BorateTransporter
Title
3D-time-lapse images of vacuolar sorting of BOR1
Description
Plants maintain nutrient homeostasis by controlling the activities and abundance of nutrient transporters. In Arabidopsis thaliana, the borate (B) transporter BOR1 plays a role in the efficient translocation of B under low-B conditions. BOR1 undergoes polyubiquitination in the presence of sufficient B and is then transported to the vacuole via multivesicular bodies (MVBs) to prevent B accumulation in tissues at a toxic level. A previous study indicated that BOR1 physically interacts with mu subunits of adaptor protein complexes AP-3 and AP-4, both involved in vacuolar sorting pathways. In this study, we investigated the roles of AP-3 and AP-4 subunits in BOR1 trafficking in Arabidopsis. The lack of AP-3 subunits did not affect either vacuolar sorting or polar localization of BOR1-GFP, whereas the absence of AP-4 subunits resulted in a delay in high-B-induced vacuolar sorting without affecting polar localization. Super-resolution microscopy revealed a rapid sorting of BOR1-GFP into AP-4-positive spots in the trans-Golgi network (TGN) upon high-B supply. These results indicate that AP-4 is involved in sequestration of ubiquitinated BOR1 into a TGN-specific subdomain 'vacuolar-trafficking zone', and is required for efficient sorting of MVB and vacuole. Their findings have thus helped elucidate the rapid vacuolar sorting process facilitated by AP-4 in plant nutrient transporters.
License
CC BY 4.0
Funding
JSPS Grant-in-Aid for Scientific Research on Innovative Areas (19H05763 to J.T.), JSPS Grant-in-Aid for Scientific Research (A) (19H00934 to J.T.), JSPS Grant-in-Aid for Young Scientists (A) (26712007 to J.T.), Grant-in-Aid for Scientific Research(B) (22H02643 to T.U.), Grant-in-Aid for Challenging Research (Exploratory) (22K19327 to T.U.), JST CREST (JPMJCR20E5 to T.U.), JST PRESTO (JPMJPR22D9 to A.Y.) and Asahi Glass Foun- dation (to T.U.).

Dataset

Title
Z-series images of BOR1-GFP, AP1M2-TagRFP and AP4M-iRFP in Arabidopsis root obtained by SCLIM
Description
Z-series images of BOR1(borate transporter)-GFP, AP1M2-TagRFP and AP4M-iRFP in Arabidopsis root obtained by SCLIM (super-resolution confocal live-imaging microscopy). The images are also included that were processed using deconvolution algorithms with theoretical point-spread functions in Volocity software.
License
CC BY 4.0
Submitted at
None
Released at
None
Updated at

Biosamples

Description
The roots of Arabidopsis thaliana grown on MGRL medium contain- ing 0.5 micromolar boric acid, 1.5% gellan gum and 1% sucrose for 4 or 5 days.
Organisms
Arabidopsis thaliana (NCBI:txid3702)
Strains
Col-0
Cells
epidermal cell (CL_0000362)
Cell lines
Intrinsic variables
Extrinsic variables
BOR1-GFP, AP1M2-TagRFP and AP4M-iRFP were exogenously expressed. A. thaliana roots were treated with 100 micromolar boric acid at the start of imaging.

Ontologies

UBERON
Anatomical entities
MeSH: Plant Roots
Gene ontology: Biological processes
vesicle-mediated transport (GO:0016192)
Gene ontology: Cellular components
vesicle membrane (GO:0012506) plasma membrane (GO:0005886) vacuole (GO:0005773)
Gene ontology: Molecular functions
active borate transmembrane transporter activity (GO:0046715)

Genetics

Gene names
Protein names
Boron transporter 1 (Q8VYR7) AP-1 complex subunit mu-2 (O22715) AP-4 complex subunit mu (Q9SB50)
Genetic methods
Agrobacterium-mediated floral-dip transformation
Protein tags
iRFP713 (FBbi:00000516)
Probes
Oligo Primer
Genotype

Treatments

Reagent or Compound
Concentrations
100 micromolar (UO_0000064)
FoldDilution

Imaging Methods

Dimensions
300x300x72x3x1, 300x300x72x3x1
X scales
Y scales
Z scales
T scales
Channels
3 channel
Microscopy types
confocal microscopy (FBbi:00000251)
Detection methods
Visualization methods
Green fluorescent protein from Aequorea TagRFP iRFP713
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
super resolution confocal live imaging microscopy (SCLIM)
Image parameters
Sample preparation methods
living tissue

Instruments

Body
Olympus-Evident IX73
Model
Light source
Detector
Objective
Olympus-Evident UPLSAPO100XS
Filter set
Dichroic