393-Fujimoto-CoV2Infect

Project

Title
SARS-CoV-2 infection to the co-culture of bronchial organoids and vascular beds in a microfluidic device
Description
Blood vessels show various COVID-19-related conditions including thrombosis and cytokine propagation. Existing in vitro blood vessel models cannot represent the consequent changes in the vascular structure or determine the initial infection site, making it difficult to evaluate how epithelial and endothelial tissues are damaged. Here, the authors developed a microphysiological system (MPS) that co-culture the bronchial organoids and the vascular bed to analyze infection site and interactions. In this system, virus-infected organoids caused damage in vascular structure. However, vasculature was not damaged or infected when the virus was directly introduced to vascular bed. The knockout of interferon-related genes and inhibition of the JAK/STAT pathway reduced the vascular damage, indicating the protective effect of interferon response suppression. The results demonstrate selective infection of bronchial epithelial cells and vascular damage by cytokines and also indicate the applicability of MPS to investigate how the infection influences vascular structure and functions.
License
CC BY
Released at
Oct. 20, 2025, midnight
Updated at
Funding
KAKENHI (Grant-in-Aid for Scientific Research) on Priority Areas ‘Systems Genomics’ [17017038]
# of image datasets
9

Papers

Papers
Paper information: Fujimoto K, Kameda Y, Nagano Y, Deguchi S, Yamamoto T, Krol RP, Gee P, Matsumura Y, Okamoto T, Nagao M, Takayama K, Yokokawa R. SARS-CoV-2-induced disruption of a vascular bed in a microphysiological system caused by type-I interferon from bronchial organoids. Lab Chip . 2024 Aug 6;24(16):3863-3879.,
Pubmed ID: 38252025,
DOI: https://doi.org/0.1039/d3lc00768e,
URL: https://pubmed.ncbi.nlm.nih.gov/38252025/

Contacts

Contacts
Ryuji Yokokawa (Contact) , Kyoto University
Kazuo Takayama (Contact) , Kyoto University
Kazuya Fujimoto (Imaging contributor) , Kyoto University
Yoshikazu Kameda (Imaging contributor) , Kyoto University
Yuta Nagano (Imaging contributor) , Kyoto University

Biosamples

Organisms
Homo sapiens (NCBI:txid9606)
Strains

Cells
endothelial cell of umbilical vein (CL_0002618)
bronchial epithelial cell (CL_0002328)
Cell lines

Ontologies

UBERON
Anatomical entities
GO: Biological processes
viral process (GO:0016032)
GO: Cellular components
nucleus (GO:0005634)
actin cytoskeleton (GO:0015629)
GO: Molecular functions

Genetics

Gene names
Protein names
Intercellular adhesion molecule 1 (P05362)
Platelet endothelial cell adhesion molecule (P16284)
Actin, cytoplasmic 1 (P60709)
Genetic methods
Protein tags
Alexa Fluor 647 (FBbi:00000447)
Green fluorescent protein from Aequorea (FBbi:00000437)
Probes
DAPI (FBbi:00000459)
affinity for specific proteins, phalloidin (FBbi:00000459)
Oligo Primer
Genotype

Treatments

Reagent or Compound
Concentration
Fold Dilution
mock virus
0.1 multiplicity of infection (UO_0010075)
SARS-CoV-2 virus
0.1 multiplicity of infection (UO_0010075)
SARS-CoV-2 virus
0.1 multiplicity of infection (UO_0010075)
SARS-CoV-2 virus
0.1 multiplicity of infection (UO_0010075)
SARS-CoV-2 virus
0.1 multiplicity of infection (UO_0010075)
SARS-CoV-2 virus
0.1 multiplicity of infection (UO_0010075)
baricitinib (CHEBI:95341)
5 micromolar (UO_0000064)
tofacitinib (CHEBI:71200)
1 micromolar (UO_0000064)

Imaging Methods

Dimensions
2002x2972x11x5x1, 248x250x30x5x1, 1920x1200x1x1x1, 600x400x20x5x1, 2001x2973x11x1x1, 2048x2048x29x4x1,
X scales
0.93 micrometer, 0.31 micrometer, 2.33 micrometer, 0.47 micrometer, 1.24 micrometer,
Y scales
0.93 micrometer, 0.31 micrometer/pixel, 2.33 micrometer, 0.47 micrometer, 1.24 micrometer,
Z scales
5.18 micrometer, 5.11 micrometer, 3.22 micrometer, NA, 4.88 micrometer, 2.88 micrometer,
T scales
NA,
Channels
1 channel, 4 channel, 5 channel,
Microscopy types
fluorescence microscopy (FBbi:00000246)
confocal microscopy (FBbi:00000251)
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Body
Olympus-Evident CKX53
Model
Light source
U-RFL-T
Detector
Olympus-Evident DP74
Objective
Olympus-Evident UPLanFLN4X
Filter set
U-FBNA
Dichroic
Body
Olympus-Evident CKX53
Model
Light source
U-RFL-T
Detector
Olympus-Evident DP74
Objective
Olympus-Evident CACHN20XIPC
Filter set
U-FBNA
Dichroic
Body
Olympus-Evident CKX53
Model
Light source
U-RFL-T
Detector
Olympus-Evident DP74
Objective
Olympus-Evident CACHN10XIPC
Filter set
U-FBNA
Dichroic
Body
Olympus-Evident FV3000
Model
Light source
Detector
Objective
Olympus-Evident UPLXAPO10X
Filter set
Dichroic
Body
Olympus-Evident FV3000
Model
Light source
Detector
Objective
Olympus-Evident LUCPLFLN20X
Filter set
Dichroic

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Homo sapiens (NCBI:txid9606)
1920x1200x1x1x1
142MB
zip
Homo sapiens (NCBI:txid9606)
1920x1200x1x1x1
64MB
zip
Homo sapiens (NCBI:txid9606)
1920x1200x1x1x1
64MB
zip
Homo sapiens (NCBI:txid9606)
/ Intercellular adhesion molecule 1 (P05362) / Actin, cytoplasmic 1 (P60709)
2002x2972x11x5x1
661MB
zip
Homo sapiens (NCBI:txid9606)
/ Actin, cytoplasmic 1 (P60709)
2001x2973x11x1x1
131MB
zip
Homo sapiens (NCBI:txid9606)
NA / Platelet endothelial cell adhesion molecule (P16284) / Actin, cytoplasmic 1 (P60709)
2048x2048x29x4x1
928MB
zip
Homo sapiens (NCBI:txid9606)
NA / Intercellular adhesion molecule 1 (P05362) / Actin, cytoplasmic 1 (P60709)
248x250x30x5x1
18.7MB
zip
Homo sapiens (NCBI:txid9606)
/ Intercellular adhesion molecule 1 (P05362) / Actin, cytoplasmic 1 (P60709)
600x400x20x5x1
48MB
zip
Homo sapiens (NCBI:txid9606)
/ Intercellular adhesion molecule 1 (P05362) / Actin, cytoplasmic 1 (P60709)
600x400x20x5x1
48MB
zip