Summary of ssbd-repos-000180

SSBD:database
URL

Name
ssbd-repos-000180 (180-Watabe-Biosensoractivity)
URL
DOI
-

Title
Imges of different biosensors activity expressed in HeLa cells, MDCK cells or mice ear skin.
Description
-
Submited Date
-
Release Date
2022-03-31
Updated Date
-
License
Funding information
-
File formats
Data size
3.9 GB

Organism
Mus musculus, Homo sapiens, Canis lupus familiaris
Strain
-
Cell Line
MDCK cell, HeLa cell
Genes
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Proteins
ERK, JNK, PKA, ROCK, bPAC

GO Molecular Function (MF)
extracellular signal-regulated kinase activity
GO Biological Process (BP)
NA
GO Cellular Component (CC)
NA
Study Type
HEK293 Cells, Adenylyl Cyclases, Biosensing Techniques, Female, Transgenic, Humans, Mice, Dogs, Fluorescence Resonance Energy Transfer, Cyclic AMP-Dependent Protein Kinases/genetics, Optogenetics, Green Fluorescent Proteins, Fluorescence, Male, Luminescent Proteins, Light, Cyclic AMP-Dependent Protein Kinases, Animals, Madin Darby Canine Kidney Cells, Spectrometry, Cyclic AMP-Dependent Protein Kinases/metabolism, Bacterial Proteins, HeLa Cells
Imaging Methods
time lapse microscopy, fluorescence microscopy, FRET, differences in fluorescence lifetime

Method Summary
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Related paper(s)

Tetsuya Watabe, Kenta Terai, Kenta Sumiyama, Michiyuki Matsuda (2020) Booster, a Red-Shifted Genetically Encoded Forster Resonance Energy Transfer (FRET) Biosensor Compatible with Cyan Fluorescent Protein/Yellow Fluorescent Protein-Based FRET Biosensors and Blue Light-Responsive Optogenetic Tools., ACS sensors, Volume 5, Number 3, pp. 719-730

Published in 2020 Mar 27 (Electronic publication in Feb. 26, 2020, midnight )

(Abstract) Genetically encoded Forster resonance energy transfer (FRET)-based biosensors have been developed for the visualization of signaling molecule activities. Currently, most of them are comprised of cyan and yellow fluorescent proteins (CFP and YFP), precluding the use of multiple FRET biosensors within a single cell. Moreover, the FRET biosensors based on CFP and YFP are incompatible with the optogenetic tools that operate at blue light. To overcome these problems, here, we have developed FRET biosensors with red-shifted excitation and emission wavelengths. We chose mKOkappa and mKate2 as the favorable donor and acceptor pair by calculating the Forster distance. By optimizing the order of fluorescent proteins and modulatory domains of the FRET biosensors, we developed a FRET biosensor backbone named "Booster". The performance of the protein kinase A (PKA) biosensor based on the Booster backbone (Booster-PKA) was comparable to that of AKAR3EV, a previously developed FRET biosensor comprising CFP and YFP. For the proof of concept, we first showed simultaneous monitoring of activities of two protein kinases with Booster-PKA and ERK FRET biosensors based on CFP and YFP. Second, we showed monitoring of PKA activation by Beggiatoa photoactivated adenylyl cyclase, an optogenetic generator of cyclic AMP. Finally, we presented PKA activity in living tissues of transgenic mice expressing Booster-PKA. Collectively, the results demonstrate the effectiveness and versatility of Booster biosensors as an imaging tool in vitro and in vivo.
(MeSH Terms)

Contact(s)
Kenta Terai
Organization(s)
Graduate School of Medicine, Kyoto University , Department of Pathology and Biology of Diseases
Image Data Contributors
Quantitative Data Contributors

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