Summary of 68-Sakaguchi-NeuronFluo

SSBD:database
SSBD:database URL

SSBD:repository
SSBD:repository URL

Title
A set of labeling images of neuronal circuits labeling with fluorescent proteins in M. musculus
Description
-
Relase date
2019-11-20
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
67 ( Image datasets: 67, Quantitative data datasets: 0 )
Size of Datasets
269.1 GB ( Image datasets: 269.1 GB, Quantitative data datasets: 0 bytes )

Organism(s)
M. musculus

Datatype
neuronal morphology
Molecular Function (MF)
Biological Process (BP)
olfactory behavior, cell morphogenesis involved in neuron differentiation
Cellular Component (CC)
dendrite
Biological Imaging Method
-
XYZ Scale
XY: 0.0901435 micrometer/pixel, Z: 0.3345151 micrometer/slice, XY: 0.0901435 micrometer/pixel, Z: 0.9997 micrometer/slice, XY: 0.0901435 micrometer/pixel, Z: 1 micrometer/slice, XY: 0.5677 micrometer/pixel, Z: 20.0016909 micrometer/slice, XY: 0.3786028 micrometer/pixel, Z: 1.03815 micrometer/slice, XY: 0.070988 micrometer/pixel, Z: 1.0419952 micrometer/slice, XY: 0.7569968 micrometer/pixel, Z: 4.9985 micrometer/slice, XY: 0.2839521 micrometer/pixel, Z: 0.7497749 micrometer/slice, XY: 0.0450718 micrometer/pixel, Z: 0.242235 micrometer/slice, XY: 0.0180287 micrometer/pixel, Z: 0.2422349 micrometer/slice, XY: 1.5152 micrometer/pixel, Z: 10.0008 micrometer/slice, XY: 0.7570693 micrometer/pixel, Z: 4.9985 micrometer/slice, XY: 0.5679043 micrometer/pixel, Z: 1 micrometer/slice, XY: 0.0946507 micrometer/pixel, Z: 1.9994 micrometer/slice, XY: 0.0300478 micrometer/pixel, Z: 0.3306699 micrometer/slice, XY: 0.300478 micrometer/pixel, Z: 0.242235 micrometer/slice, XY: 0.0189302 micrometer/pixel, Z: 0.33067 micrometer/slice, XY: 0.0180287 micrometer/pixel, Z: 0.242235 micrometer/slice, XY: 0.2840909 micrometer/pixel, Z: 0.9999284 micrometer/slice, XY: 0.0946507 micrometer/pixel, Z: 1 micrometer/slice
T scale
-

Image Acquisition
Experiment type
Other
Microscope type
ConfocalMicroscope
Acquisition mode
FluorescenceCorrelationSpectroscopy
Contrast method
Fluorescence
Microscope model
TCS SP8X
Detector model
Leica HyD
Objective model
-
Filter set
-

Related paper(s)

Richi Sakaguchi, Marcus N Leiwe, Takeshi Imai (2018) Bright multicolor labeling of neuronal circuits with fluorescent proteins and chemical tags., eLife, Volume 7

Published in 2018 Nov 20 (Electronic publication in Nov. 20, 2018, midnight )

(Abstract) The stochastic multicolor labeling method 'Brainbow' is a powerful strategy to label multiple neurons differentially with fluorescent proteins; however, the fluorescence levels provided by the original attempts to use this strategy were inadequate. In the present study, we developed a stochastic multicolor labeling method with enhanced expression levels that uses a tetracycline-operator system (Tetbow). We optimized Tetbow for either plasmid or virus vector-mediated multicolor labeling. When combined with tissue clearing, Tetbow was powerful enough to visualize the three-dimensional architecture of individual neurons. Using Tetbow, we were able to visualize the axonal projection patterns of individual mitral/tufted cells along several millimeters in the mouse olfactory system. We also developed a Tetbow system with chemical tags, in which genetically encoded chemical tags were labeled with synthetic fluorophores. This was useful in expanding the repertoire of the fluorescence labels and the applications of the Tetbow system. Together, these new tools facilitate light-microscopy-based neuronal tracing at both a large scale and a high resolution.
(MeSH Terms)

Contact
Takeshi Imai , Kyushu University , Graduate School of Medical Sciences , Department of Developmental Neurophysiology
Contributors
Richi Sakaguchi, Marcus N. Leiwe, Takeshi Imai


Dataset List of 68-Sakaguchi-NeuronFluo

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
# 3782
Datast ID fig2A_p21_high
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3783
Datast ID fig2A_p21_low
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3784
Datast ID fig2B_p21_tetbow
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3785
Datast ID fig2C_p21_high1
Dataset Kind Image data
Dataset Size 2.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3786
Datast ID fig2C_p21_high2
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3787
Datast ID fig2C_p21_low1
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3788
Datast ID fig2C_p21_low2
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3789
Datast ID fig2D_p21_tetbow1
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3790
Datast ID fig2D_p21_tetbow2
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3791
Dataset Kind Image data
Dataset Size 14.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3792
Dataset Kind Image data
Dataset Size 600.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3793
Dataset Kind Image data
Dataset Size 11.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3794
Dataset Kind Image data
Dataset Size 600.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3795
Datast ID fig3A_p21_tetbow01
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3796
Datast ID fig3A_p21_tetbow05
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3797
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3798
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3799
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3800
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3801
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3802
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3803
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3804
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3805
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3806
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3807
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3808
Datast ID fig3D_p21_tTA01
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3809
Datast ID fig3D_p21_tTA01_2
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3810
Datast ID fig3D_p21_tTA01_3
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3811
Datast ID fig3D_p21_tTA05
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3812
Datast ID fig3D_p21_tTA05_2
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3813
Datast ID fig3D_p21_tTA05_3
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3814
Datast ID fig3D_p21_tTA025
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3815
Datast ID fig3D_p21_tTA025_2
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3816
Datast ID fig3D_p21_tTA025_3
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3817
Datast ID fig3s1
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3818
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3819
Dataset Kind Image data
Dataset Size 3.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3820
Datast ID fig4B_p70_tetbow1
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3821
Datast ID fig4C_p70_tetbow2
Dataset Kind Image data
Dataset Size 599.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3822
Datast ID fig4s1_deep
Dataset Kind Image data
Dataset Size 408.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3823
Datast ID fig4s1_shallow
Dataset Kind Image data
Dataset Size 408.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3824
Datast ID fig5_tetbow_OB
Dataset Kind Image data
Dataset Size 8.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3825
Datast ID fig6_chemical_BABB
Dataset Kind Image data
Dataset Size 3.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3826
Dataset Kind Image data
Dataset Size 4.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3827
Dataset Kind Image data
Dataset Size 3.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3828
Dataset Kind Image data
Dataset Size 3.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3829
Dataset Kind Image data
Dataset Size 168.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3830
Datast ID fig7A_tetbow_high
Dataset Kind Image data
Dataset Size 4.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3831
Datast ID fig7A_tetbow_low
Dataset Kind Image data
Dataset Size 2.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3832
Dataset Kind Image data
Dataset Size 650.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3833
Dataset Kind Image data
Dataset Size 385.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3834
Dataset Kind Image data
Dataset Size 192.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3835
Dataset Kind Image data
Dataset Size 385.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3836
Dataset Kind Image data
Dataset Size 265.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3837
Dataset Kind Image data
Dataset Size 1012.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3838
Dataset Kind Image data
Dataset Size 867.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3839
Dataset Kind Image data
Dataset Size 457.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3840
Dataset Kind Image data
Dataset Size 5.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3841
Dataset Kind Image data
Dataset Size 16.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3842
Dataset Kind Image data
Dataset Size 6.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3843
Dataset Kind Image data
Dataset Size 26.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3844
Datast ID fig8B_tTA_OB
Dataset Kind Image data
Dataset Size 13.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3845
Datast ID fig8CD_tTA_cortex
Dataset Kind Image data
Dataset Size 28.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3846
Datast ID fig8s1A_tTA_bottom
Dataset Kind Image data
Dataset Size 24.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3847
Datast ID fig8s1B_tTA_top
Dataset Kind Image data
Dataset Size 26.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 3848
Dataset Kind Image data
Dataset Size 2.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data