Summary of 269-Wang-CellPhysicalDyn

SSBD:database
SSBD:database URL
Title
HS-SICM images or time-lapse images of the cell surface of the cells of the indicated genotype and normal crypt cells.
Description
-
Relase date
2023-07-20
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
33 ( Image datasets: 33, Quantitative data datasets: 0 )
Size of Datasets
227.1 MB ( Image datasets: 227.1 MB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens, Mus musculus
Strain(s)
C57BL/6

Datatype
-
Molecular Function (MF)
Biological Process (BP)
Cellular Component (CC)
cell surface
Biological Imaging Method
time lapse microscopy, high-speed (HS)-scanning ion conductance microscopy
X scale
2 micrometer/pixel, 0.35277806 millimeter/pixel
Y scale
2 micrometer/pixel, 0.35277806 millimeter/pixel
Z scale
-
T scale
21.2 second/minuter of time interval, 22.0 second/minuter of time interval, 23.4 second/minuter of time interval, 25.8 second/minuter of time interval, 22.1 second/minuter of time interval, 19.2 second/minuter of time interval, 18.1 second/minuter of time interval, 26.0 second/minuter of time interval, 17.0 second/minuter of time interval, 23.3 second/minuter of time interval, 19.5 second/minuter of time interval, NA, 30.2 second/minuter of time interval, 28.8 second/minuter of time interval, 26.1 second/minuter of time interval, 21.1 second/minuter of time interval, 18.3 second/minuter of time interval, 22.5 second/minuter of time interval, 20.4 second/minuter of time interval, 18.7 second/minuter of time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Dong Wang, Linhao Sun, Satoru Okuda, Daisuke Yamamoto, Mizuho Nakayama, Hiroko Oshima, Hideyuki Saito, Yuta Kouyama, Koshi Mimori, Toshio Ando, Shinji Watanabe, Masanobu Oshima (2022) Nano-scale physical properties characteristic to metastatic intestinal cancer cells identified by high-speed scanning ion conductance microscope., Biomaterials, Volume 280, pp. 121256

Published in 2022 Jan (Electronic publication in Nov. 13, 2021, midnight )

(Abstract) Recent genetic studies have indicated relationships between gene mutations and colon cancer phenotypes. However, how physical properties of tumor cells are changed by genetic alterations has not been elucidated. We examined genotype-defined mouse intestinal tumor-derived cells using a high-speed scanning ion conductance microscope (HS-SICM) that can obtain high-resolution live images of nano-scale topography and stiffness. The tumor cells used in this study carried mutations in Apc (A), Kras (K), Tgfbr2 (T), Trp53 (P), and Fbxw7 (F) in various combinations. Notably, high-metastatic cancer-derived cells carrying AKT mutations (AKT, AKTP, and AKTPF) showed specific ridge-like morphology with active membrane volume change, which was not found in low-metastatic and adenoma-derived cells. Furthermore, the membrane was significantly softer in the metastatic AKT-type cancer cells than other genotype cells. Importantly, a principal component analysis using RNAseq data showed similar distributions of expression profiles and physical properties, indicating a link between genetic alterations and physical properties. Finally, the malignant cell-specific physical properties were confirmed by an HS-SICM using human colon cancer-derived cells. These results indicate that the HS-SICM analysis is useful as a novel diagnostic strategy for predicting the metastatic ability of cancer cells.
(MeSH Terms)

Contact
Masanobu Oshima , Kanazawa University , Cancer Research Institute , WPI Nano-Life Science Institute
Contributors


Dataset List of 269-Wang-CellPhysicalDyn

#
Dataset ID
Kind
Size
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# 10719
Datast ID Fig1C_organoid_A
Dataset Kind Image data
Dataset Size 469.3 KB
4D view
SSBD:OMERO
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# 10720
Datast ID Fig1C_organoid_AK
Dataset Kind Image data
Dataset Size 469.3 KB
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SSBD:OMERO
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# 10721
Datast ID Fig1C_organoid_AKF
Dataset Kind Image data
Dataset Size 469.3 KB
4D view
SSBD:OMERO
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# 10722
Datast ID Fig1C_organoid_AKP
Dataset Kind Image data
Dataset Size 469.3 KB
4D view
SSBD:OMERO
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# 10723
Datast ID Fig1C_organoid_AKT
Dataset Kind Image data
Dataset Size 469.3 KB
4D view
SSBD:OMERO
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# 10724
Dataset Kind Image data
Dataset Size 469.3 KB
4D view
SSBD:OMERO
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# 10725
Dataset Kind Image data
Dataset Size 469.3 KB
4D view
SSBD:OMERO
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# 10726
Dataset Kind Image data
Dataset Size 469.3 KB
4D view
SSBD:OMERO
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# 10727
Dataset Kind Image data
Dataset Size 2.2 MB
4D view
SSBD:OMERO
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# 10728
Dataset Kind Image data
Dataset Size 2.1 MB
4D view
SSBD:OMERO
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# 10729
Dataset Kind Image data
Dataset Size 2.3 MB
4D view
SSBD:OMERO
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# 10730
Datast ID VideoS1_LiveCell_A
Dataset Kind Image data
Dataset Size 10.5 MB
4D view
SSBD:OMERO
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# 10731
Dataset Kind Image data
Dataset Size 14.2 MB
4D view
SSBD:OMERO
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# 10732
Dataset Kind Image data
Dataset Size 10.5 MB
4D view
SSBD:OMERO
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# 10733
Dataset Kind Image data
Dataset Size 13.3 MB
4D view
SSBD:OMERO
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# 10734
Dataset Kind Image data
Dataset Size 11.5 MB
4D view
SSBD:OMERO
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# 10735
Dataset Kind Image data
Dataset Size 10.1 MB
4D view
SSBD:OMERO
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# 10736
Dataset Kind Image data
Dataset Size 10.1 MB
4D view
SSBD:OMERO
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# 10737
Dataset Kind Image data
Dataset Size 13.3 MB
4D view
SSBD:OMERO
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# 10738
Dataset Kind Image data
Dataset Size 8.3 MB
4D view
SSBD:OMERO
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# 10739
Dataset Kind Image data
Dataset Size 4.1 MB
4D view
SSBD:OMERO
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# 10740
Dataset Kind Image data
Dataset Size 6.4 MB
4D view
SSBD:OMERO
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# 10741
Dataset Kind Image data
Dataset Size 4.1 MB
4D view
SSBD:OMERO
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# 10742
Dataset Kind Image data
Dataset Size 12.4 MB
4D view
SSBD:OMERO
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# 10743
Dataset Kind Image data
Dataset Size 6.4 MB
4D view
SSBD:OMERO
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# 10744
Dataset Kind Image data
Dataset Size 4.6 MB
4D view
SSBD:OMERO
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# 10745
Dataset Kind Image data
Dataset Size 4.6 MB
4D view
SSBD:OMERO
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# 10746
Dataset Kind Image data
Dataset Size 5.5 MB
4D view
SSBD:OMERO
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# 10747
Dataset Kind Image data
Dataset Size 16.5 MB
4D view
SSBD:OMERO
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# 10748
Dataset Kind Image data
Dataset Size 9.6 MB
4D view
SSBD:OMERO
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# 10749
Dataset Kind Image data
Dataset Size 9.2 MB
4D view
SSBD:OMERO
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# 10750
Dataset Kind Image data
Dataset Size 13.8 MB
4D view
SSBD:OMERO
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# 10751
Dataset Kind Image data
Dataset Size 17.9 MB
4D view
SSBD:OMERO
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