Summary of 233-Nishiyama-CellDyn

SSBD:database
SSBD:database URL
Title
Live imaging of HEK293 cells expressing P2Y6 receptors or P2Y6R mutants.
Description
-
Relase date
2022-11-23
Updated date
-
License
CC-BY
Kind
Image data based on Experiment
Number of Datasets
41 ( Image datasets: 41, Quantitative data datasets: 0 )
Size of Datasets
90.9 MB ( Image datasets: 90.9 MB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens
Cell lines(s)
HEK293
Protein name(s)
A2BAR, AT1R, P2Y6R
Protein tag(s)
EGFP, YFP

Datatype
-
Molecular Function (MF)
G protein-coupled receptor kinase activity
Biological Process (BP)
regulation of G protein-coupled receptor internalization
Cellular Component (CC)
Biological Imaging Method
confocal microscopy, fluorescence microscopy
X scale
84.6582 micrometer/pixel, NA
Y scale
84.6582 micrometer/pixel, NA
Z scale
-
T scale
NA, 10 second per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Kazuhiro Nishiyama, Akiyuki Nishimura, Kakeru Shimoda, Tomohiro Tanaka, Yuri Kato, Takahiro Shibata, Hiroshi Tanaka, Hitoshi Kurose, Yasu-Taka Azuma, Hideshi Ihara, Yoshito Kumagai, Takaaki Akaike, Philip Eaton, Koji Uchida, Motohiro Nishida (2022) Redox-dependent internalization of the purinergic P2Y6 receptor limits colitis progression., Science signaling, Volume 15, Number 716, pp. eabj0644

Published in 2022 Jan 11 (Electronic publication in Jan. 11, 2022, midnight )

(Abstract) After ligand stimulation, many G protein-coupled receptors (GPCRs) undergo beta-arrestin-dependent desensitization, during which they are internalized and either degraded or recycled to the plasma membrane. Some GPCRs are not subject to this type of desensitization because they lack the residues required to interact with beta-arrestins. We identified a mechanism of redox-dependent alternative internalization (REDAI) that promotes the internalization and degradation of the purinergic P2Y6 receptor (P2Y6R). Synthetic and natural compounds containing electrophilic isothiocyanate groups covalently modified P2Y6R at Cys(220), which promoted the ubiquitylation of Lys(137) and receptor internalization and degradation in various mouse and human cultured cell lines. Endogenous electrophiles also promoted ligand-dependent P2Y6R internalization and degradation. P2Y6R is highly abundant in inflammatory cells and promotes the pathogenesis of colitis. Deficiency in P2Y6R protected mice against experimentally induced colitis, and mice expressing a form of P2Y6R in which Cys(220) was mutated to nonmodifiable serine were more sensitive to the induction of colitis. Several other GPCRs, including A2BAR, contain cysteine and lysine residues at the appropriate positions to mediate REDAI, and isothiocyanate stimulated the internalization of A2BAR and of a form of P2Y2R with insertions of the appropriate residues. Thus, endogenous and exogenous electrophiles may limit colitis progression through cysteine modification of P2Y6R and may also mediate internalization of other GPCRs.
(MeSH Terms)

Contact
Motohiro Nishida , Kyushu University , Graduate School of Pharmaceutical Sciences
Contributors


Dataset List of 233-Nishiyama-CellDyn

#
Dataset ID
Kind
Size
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# 8730
Datast ID Fig1C_WT_SFN_0min
Dataset Kind Image data
Dataset Size 241.3 KB
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# 8731
Datast ID Fig1C_WT_SFN_60min
Dataset Kind Image data
Dataset Size 184.0 KB
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SSBD:OMERO
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# 8732
Dataset Kind Image data
Dataset Size 161.9 KB
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SSBD:OMERO
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# 8733
Datast ID Fig2B_C220S_SFN_0h
Dataset Kind Image data
Dataset Size 29.4 KB
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SSBD:OMERO
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# 8734
Dataset Kind Image data
Dataset Size 25.3 KB
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SSBD:OMERO
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# 8735
Dataset Kind Image data
Dataset Size 26.6 KB
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SSBD:OMERO
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# 8736
Datast ID Fig3A_WT_GSNO_0min
Dataset Kind Image data
Dataset Size 209.8 KB
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SSBD:OMERO
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# 8737
Dataset Kind Image data
Dataset Size 158.5 KB
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SSBD:OMERO
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# 8738
Dataset Kind Image data
Dataset Size 166.2 KB
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SSBD:OMERO
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# 8739
Datast ID Fig3E_WT_UDP_0min
Dataset Kind Image data
Dataset Size 242.4 KB
4D view
SSBD:OMERO
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# 8740
Datast ID Fig3E_WT_UDP_30min
Dataset Kind Image data
Dataset Size 209.6 KB
4D view
SSBD:OMERO
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# 8741
Datast ID Fig3E_WT_UDP_60min
Dataset Kind Image data
Dataset Size 195.3 KB
4D view
SSBD:OMERO
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# 8742
Dataset Kind Image data
Dataset Size 221.9 KB
4D view
SSBD:OMERO
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# 8743
Dataset Kind Image data
Dataset Size 199.2 KB
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SSBD:OMERO
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# 8744
Dataset Kind Image data
Dataset Size 187.6 KB
4D view
SSBD:OMERO
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# 8745
Dataset Kind Image data
Dataset Size 41.4 KB
4D view
SSBD:OMERO
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# 8746
Dataset Kind Image data
Dataset Size 39.5 KB
4D view
SSBD:OMERO
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# 8747
Dataset Kind Image data
Dataset Size 37.3 KB
4D view
SSBD:OMERO
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# 8748
Dataset Kind Image data
Dataset Size 434.0 KB
4D view
SSBD:OMERO
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# 8749
Dataset Kind Image data
Dataset Size 423.3 KB
4D view
SSBD:OMERO
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# 8750
Dataset Kind Image data
Dataset Size 389.5 KB
4D view
SSBD:OMERO
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# 8751
Dataset Kind Image data
Dataset Size 83.1 KB
4D view
SSBD:OMERO
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# 8752
Dataset Kind Image data
Dataset Size 82.0 KB
4D view
SSBD:OMERO
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# 8753
Dataset Kind Image data
Dataset Size 72.0 KB
4D view
SSBD:OMERO
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# 8754
Dataset Kind Image data
Dataset Size 396.2 KB
4D view
SSBD:OMERO
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# 8755
Dataset Kind Image data
Dataset Size 352.9 KB
4D view
SSBD:OMERO
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# 8756
Dataset Kind Image data
Dataset Size 563.7 KB
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SSBD:OMERO
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# 8757
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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# 8758
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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# 8759
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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# 8760
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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# 8761
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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# 8762
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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# 8763
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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# 8764
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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# 8765
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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# 8766
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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# 8767
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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# 8768
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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# 8769
Dataset Kind Image data
Dataset Size 31.0 MB
4D view
SSBD:OMERO
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# 8770
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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