Summary of 203-Tanabe-SingleDyn

SSBD:database
SSBD:database URL
Title
Images of signaling molecules dynamic in Dictyostelium discoideum cells.
Description
-
Relase date
2022-03-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
11 ( Image datasets: 11, Quantitative data datasets: 0 )
Size of Datasets
254.5 MB ( Image datasets: 254.5 MB, Quantitative data datasets: 0 bytes )

Organism(s)
Dictyostelium discoideum
Strain(s)
gcΔ cell, Dictyostelium discoideum AX2 (NCBI:txid366501)
Gene symbol(s)
gc
Protein name(s)
LimE, PHPKB, PIP3, sGC, sGCN, sGCWT
Protein tag(s)
GFP, TMR, mRFP

Datatype
-
Molecular Function (MF)
cAMP binding
Biological Process (BP)
NA, chemotaxis
Cellular Component (CC)
-
Biological Imaging Method
confocal microscopy
X scale
3.9370 micrometer/pixel, 0.174 micrometer/pixel, 0.254 micrometer/pixel, 6.0606 micrometer/pixel, 0.11 micrometer/pixel
Y scale
3.9370 micrometer/pixel, 0.174 micrometer/pixel, 0.254 micrometer/pixel, 6.0606 micrometer/pixel, 0.11 micrometer/pixel
Z scale
-
T scale
3 second per time interval, 2.99 second per time interval, 5 second per time interval, 2.95 second per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Yuki Tanabe, Yoichiro Kamimura, Masahiro Ueda (2018) Parallel signaling pathways regulate excitable dynamics differently to mediate pseudopod formation during eukaryotic chemotaxis., Journal of cell science, Volume 131, Number 23

Published in 2018 Dec 5 (Electronic publication in Dec. 5, 2018, midnight )

(Abstract) In eukaryotic chemotaxis, parallel signaling pathways regulate the spatiotemporal pseudopod dynamics at the leading edge of a motile cell through the characteristic dynamics of an excitable system; however, differences in the excitability and the physiological roles of individual pathways remain to be elucidated. Here, we found that two different pathways, mediated by soluble guanylyl cyclase (sGC) and phosphoinositide 3-kinase (PI3K), caused similar all-or-none responses for sGC localization and phosphatidylinositol 3,4,5-trisphosphate production but with different refractory periods, by undertaking simultaneous observations of the excitable properties of the two pathways in Dictyostelium cells. Owing to the shorter refractory period, sGC signaling responded more frequently to chemoattractants, leading to pseudopod formation with higher frequency. sGC excitability was regulated negatively by its product cGMP and by cGMP-binding protein C (GbpC) through the suppression of F-actin polymerization, providing the underlying delayed negative-feedback mechanism for the cyclical pseudopod formation. These results suggest that parallel pathways respond to environmental cues on different timescales in order to mediate chemotactic motility in a manner based on their intrinsic excitability.
(MeSH Terms)

Contact
Masahiro Ueda , Osaka University , Graduate School of Frontier Biosciences , Laboratory for Cell Signaling Dynamics
Contributors


Dataset List of 203-Tanabe-SingleDyn

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 7578
Dataset Kind Image data
Dataset Size 11.8 MB
4D view
SSBD:OMERO
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# 7579
Dataset Kind Image data
Dataset Size 135.8 MB
4D view
SSBD:OMERO
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# 7580
Dataset Kind Image data
Dataset Size 611.8 KB
4D view
SSBD:OMERO
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# 7581
Datast ID Fig2A_sGC-GFP_step
Dataset Kind Image data
Dataset Size 913.4 KB
4D view
SSBD:OMERO
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# 7582
Dataset Kind Image data
Dataset Size 6.1 MB
4D view
SSBD:OMERO
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# 7583
Dataset Kind Image data
Dataset Size 6.1 MB
4D view
SSBD:OMERO
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# 7584
Datast ID Fig2B_sGC-GFP_Sp
Dataset Kind Image data
Dataset Size 6.1 MB
4D view
SSBD:OMERO
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# 7585
Dataset Kind Image data
Dataset Size 16.6 MB
4D view
SSBD:OMERO
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# 7586
Dataset Kind Image data
Dataset Size 6.3 MB
4D view
SSBD:OMERO
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# 7587
Dataset Kind Image data
Dataset Size 40.0 MB
4D view
SSBD:OMERO
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# 7588
Dataset Kind Image data
Dataset Size 24.3 MB
4D view
SSBD:OMERO
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