Summary of 189-Kobayashi-NSCsDyn 
        
     
    
    
    
    
    
    
    
    
        
    
    
    
    
    
    
    
        
            Title
        
        
            
            Confocal microscopy images of lysosomes situation in NSCs in both the DG and SVZ of mice.
            
        
     
    
    
    
    
    
    
    
    
    
    
    
    
        
            Kind
        
        
            Image data
            
            based on Experiment
            
        
     
    
    
        
            Number of Datasets
        
        
            17
            ( Image datasets: 17,
              Quantitative data datasets: 0 )
        
     
    
    
        
            Size of Datasets
        
        
            6.8 GB
            ( Image datasets: 6.8 GB,
              Quantitative data datasets: 0 bytes )
        
     
    
    
    
    
    
    
    
        
            Gene symbol(s)
        
        
            CtsB, CtsL, Lamp1
        
     
    
    
    
        
            Protein name(s)
        
        
            GFAP, Nestin, TFEB, caTFEB
        
     
    
    
    
        
            Protein tag(s)
        
        
            GFP, mCherry
        
     
    
    
    
    
    
    
    
        
            Molecular Function (MF)
        
        
            
            -
            
        
     
    
    
        
            Biological Process (BP)
        
        
            
            cell division, negative regulation of lysosomal protein catabolic process
            
        
     
    
    
        
            Cellular Component (CC)
        
        
            
            NA, lysosome
            
        
     
    
    
        
            Biological Imaging Method
        
        
            
            confocal microscopy
            
        
     
    
    
    
        
            X scale
        
        
            
            0.4612588 micrometer/pixel, 0.472329 micrometer/pixel, 0.9225176 micrometer/pixel, 0.0948875 micrometer/pixel, 0.6918882 micrometer/pixel, 0.5313701 micrometer/pixel, 0.922 micrometer/pixel, 0.4723290 micrometer/pixel, 0.0885617 micrometer/pixel, 0.4612 micrometer/pixel, 0.3148860 micrometer/pixel, 0.0708494 micrometer/pixel, 0.1107021 micrometer/pixel, 0.3936075 micrometer/pixel, 0.0878588 micrometer/pixel
            
        
     
    
        
            Y scale
        
        
            
            0.4612588 micrometer/pixel, 0.472329 micrometer/pixel, 0.9225176 micrometer/pixel, 0.0948875 micrometer/pixel, 0.6918882 micrometer/pixel, 0.5313701 micrometer/pixel, 0.922 micrometer/pixel, 0.4723290 micrometer/pixel, 0.0885617 micrometer/pixel, 0.4612 micrometer/pixel, 0.3148860 micrometer/pixel, 0.0708494 micrometer/pixel, 0.1107021 micrometer/pixel, 0.3936075 micrometer/pixel, 0.0878588 micrometer/pixel
            
        
     
    
        
            Z scale
        
        
            
            1 micrometer/slice, 1.6 micrometer/slice, 2.4 micrometer/slice
            
        
     
    
    
    
        
            T scale
        
        
            
            10 minutes per time interval, NA
            
        
     
    
    
    
        
            Image Acquisition
        
        
            Experiment type
        
        
            
            -
            
        
        
            Microscope type
        
        
            
            -
            
        
        
            Acquisition mode
        
        
            
            -
            
        
        
            Contrast method
        
        
            
            -
            
        
        
            Microscope model
        
        
            
            -
            
        
        
            Detector model
        
        
            
            -
            
        
        
            Objective model
        
        
            
            -
            
        
        
            Filter set
        
        
            
            -
            
        
     
    
    
    
    
        
            Related paper(s)
        
        
            
                Taeko Kobayashi, Wenhui Piao, Toshiya Takamura, Hiroshi Kori, Hitoshi Miyachi, Satsuki Kitano, Yumiko Iwamoto, Mayumi Yamada, Itaru Imayoshi, Seiji Shioda, Andrea Ballabio, Ryoichiro Kageyama (2019) Enhanced lysosomal degradation maintains the quiescent state of neural stem cells., Nature communications, Volume 10, Number 1, pp. 5446
            
            
                Published in 2019 Nov 29
                
                (Electronic publication in Nov. 29, 2019, midnight )
                
            
            
            
                (Abstract) Quiescence is important for sustaining neural stem cells (NSCs) in the adult brain over the lifespan. Lysosomes are digestive organelles that degrade membrane receptors after they undergo endolysosomal membrane trafficking. Enlarged lysosomes are present in quiescent NSCs (qNSCs) in the subventricular zone of the mouse brain, but it remains largely unknown how lysosomal function is involved in the quiescence. Here we show that qNSCs exhibit higher lysosomal activity and degrade activated EGF receptor by endolysosomal degradation more rapidly than proliferating NSCs. Chemical inhibition of lysosomal degradation in qNSCs prevents degradation of signaling receptors resulting in exit from quiescence. Furthermore, conditional knockout of TFEB, a lysosomal master regulator, delays NSCs quiescence in vitro and increases NSC proliferation in the dentate gyrus of mice. Taken together, our results demonstrate that enhanced lysosomal degradation is an important regulator of qNSC maintenance.
             
            
            (MeSH Terms)
            
            
         
     
    
    
    
    
        
            Contact
        
        
            Taeko Kobayashi, Ryoichiro Kageyama
            
            , Kyoto University, Kyoto University
            
            
            , Institute for Frontier Life and Medical Sciences, Institute for Frontier Life and Medical Sciences
            
            
        
     
    
    
    
    
    
        
        
            SSBD:OMERO.gallery Project 
        
        
            SSBD:OMERO Project 
        
        
     
    
    
    
    
    
        
            
Dataset List of 189-Kobayashi-NSCsDyn 
        
     
    
        
            #
        
        
            Dataset ID
        
        
            Kind
        
        
            Size
        
        
            4D View
        
        
            SSBD:OMERO
        
        
            Download BDML
        
        
            Download Images
        
     
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            8.2 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (6.5 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            64.4 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (51.5 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            328.5 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (260.8 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            15.7 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (13.6 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            75.3 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (62.3 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            262.8 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (211.9 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            15.7 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (12.8 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            94.0 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (74.6 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            262.8 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (205.6 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            15.8 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (13.4 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            94.1 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (74.2 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            328.4 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (256.7 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            5.6 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (4.6 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            38.6 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (30.6 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            144.4 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (105.6 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            2.5 GB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (910.8 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            2.5 GB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (804.9 MB)