SSBD:database

Thumbnail for 189-Kobayashi-NSCsDyn

Summary of 189-Kobayashi-NSCsDyn

SSBD:database
189-Kobayashi-NSCsDyn
SSBD:database URL
https://ssbd.riken.jp/database/189-Kobayashi-NSCsDyn/
SSBD:repository
ssbd-repos-000189
SSBD:repository URL
https://ssbd.riken.jp/repository/189/
Title
Confocal microscopy images of lysosomes situation in NSCs in both the DG and SVZ of mice.
Description
-
Release date
2022-03-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
17 ( Image datasets: 17, Quantitative data datasets: 0 )
Size of Datasets
6.8 GB ( Image datasets: 6.8 GB, Quantitative data datasets: 0 bytes )
Organism(s)
Mus musculus
Gene symbol(s)
CtsB, CtsL, Lamp1
Protein name(s)
GFAP, Nestin, TFEB, caTFEB
Protein tag(s)
GFP, mCherry
Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
cell division, negative regulation of lysosomal protein catabolic process
Cellular Component (CC)
NA, lysosome
Biological Imaging Method
confocal microscopy
X scale
0.4612588 micrometer/pixel, 0.472329 micrometer/pixel, 0.9225176 micrometer/pixel, 0.0948875 micrometer/pixel, 0.6918882 micrometer/pixel, 0.5313701 micrometer/pixel, 0.922 micrometer/pixel, 0.4723290 micrometer/pixel, 0.0885617 micrometer/pixel, 0.4612 micrometer/pixel, 0.3148860 micrometer/pixel, 0.0708494 micrometer/pixel, 0.1107021 micrometer/pixel, 0.3936075 micrometer/pixel, 0.0878588 micrometer/pixel
Y scale
0.4612588 micrometer/pixel, 0.472329 micrometer/pixel, 0.9225176 micrometer/pixel, 0.0948875 micrometer/pixel, 0.6918882 micrometer/pixel, 0.5313701 micrometer/pixel, 0.922 micrometer/pixel, 0.4723290 micrometer/pixel, 0.0885617 micrometer/pixel, 0.4612 micrometer/pixel, 0.3148860 micrometer/pixel, 0.0708494 micrometer/pixel, 0.1107021 micrometer/pixel, 0.3936075 micrometer/pixel, 0.0878588 micrometer/pixel
Z scale
1 micrometer/slice, 1.6 micrometer/slice, 2.4 micrometer/slice
T scale
10 minutes per time interval, NA
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Contact
Taeko Kobayashi, Ryoichiro Kageyama , Kyoto University, Kyoto University , Institute for Frontier Life and Medical Sciences, Institute for Frontier Life and Medical Sciences
Contributors

Dataset List of 189-Kobayashi-NSCsDyn

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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Thumbnail Thumbnail for dataset SuppFig4a_SVZ4_10z
# 7402
Datast ID SuppFig4a_SVZ4_10z
Dataset Kind Image data
Dataset Size 8.2 MB
4D view
SSBD:OMERO
Download BDML
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Thumbnail Thumbnail for dataset SuppFig4a_SVZ4_20z
# 7403
Datast ID SuppFig4a_SVZ4_20z
Dataset Kind Image data
Dataset Size 64.4 MB
4D view
SSBD:OMERO
Download BDML
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Thumbnail Thumbnail for dataset SuppFig4a_SVZ4_40z
# 7404
Datast ID SuppFig4a_SVZ4_40z
Dataset Kind Image data
Dataset Size 328.5 MB
4D view
SSBD:OMERO
Download BDML
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Thumbnail Thumbnail for dataset SuppFig4b_DG5_CtsB_10z
# 7405
Datast ID SuppFig4b_DG5_CtsB_10z
Dataset Kind Image data
Dataset Size 15.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset SuppFig4b_DG5_CtsB_20z
# 7406
Datast ID SuppFig4b_DG5_CtsB_20z
Dataset Kind Image data
Dataset Size 75.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset SuppFig4b_DG5_CtsB_40z
# 7407
Datast ID SuppFig4b_DG5_CtsB_40z
Dataset Kind Image data
Dataset Size 262.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset SuppFig4c_DG4_CtsL_10z
# 7408
Datast ID SuppFig4c_DG4_CtsL_10z
Dataset Kind Image data
Dataset Size 15.7 MB
4D view
SSBD:OMERO
Download BDML
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Thumbnail Thumbnail for dataset SuppFig4c_DG4_CtsL_20z
# 7409
Datast ID SuppFig4c_DG4_CtsL_20z
Dataset Kind Image data
Dataset Size 94.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset SuppFig4c_DG4_CtsL_40z
# 7410
Datast ID SuppFig4c_DG4_CtsL_40z
Dataset Kind Image data
Dataset Size 262.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset SuppFig4d_DG6_Lamp1_10z
# 7411
Datast ID SuppFig4d_DG6_Lamp1_10z
Dataset Kind Image data
Dataset Size 15.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset SuppFig4d_DG6_Lamp1_20z
# 7412
Datast ID SuppFig4d_DG6_Lamp1_20z
Dataset Kind Image data
Dataset Size 94.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset SuppFig4d_DG6_Lamp1_40z
# 7413
Datast ID SuppFig4d_DG6_Lamp1_40z
Dataset Kind Image data
Dataset Size 328.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset SuppFig4e_DG_10z
# 7414
Datast ID SuppFig4e_DG_10z
Dataset Kind Image data
Dataset Size 5.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset SuppFig4e_DG_20z
# 7415
Datast ID SuppFig4e_DG_20z
Dataset Kind Image data
Dataset Size 38.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset SuppFig4e_DG_60z
# 7416
Datast ID SuppFig4e_DG_60z
Dataset Kind Image data
Dataset Size 144.4 MB
4D view
SSBD:OMERO
Download BDML
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Thumbnail Thumbnail for dataset Supp_movie1_wt_24h
# 7417
Datast ID Supp_movie1_wt_24h
Dataset Kind Image data
Dataset Size 2.5 GB
4D view
SSBD:OMERO
Download BDML
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Thumbnail Thumbnail for dataset Supp_movie2_ca_24h
# 7418
Datast ID Supp_movie2_ca_24h
Dataset Kind Image data
Dataset Size 2.5 GB
4D view
SSBD:OMERO
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Download Image data