Summary of 180-Watabe-Biosensoractivity

SSBD:database
SSBD:database URL
Title
Imges of different biosensors activity expressed in HeLa cells, MDCK cells or mice ear skin.
Description
-
Relase date
2022-03-31
Updated date
-
License
CC-BY
Kind
Image data based on Experiment
Number of Datasets
115 ( Image datasets: 115, Quantitative data datasets: 0 )
Size of Datasets
3.9 GB ( Image datasets: 3.9 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus, Homo sapiens, Canis lupus familiaris
Cell lines(s)
MDCK cell, HeLa cell
Protein name(s)
ERK, JNK, PKA, ROCK, bPAC
Protein tag(s)
mCherry
Reporter(s)
AKAR3EV, Booster- PKA, Booster-ERK, Booster-JNK, Booster-PKA, Booster-ROCK2, EKAREV

Datatype
-
Molecular Function (MF)
extracellular signal-regulated kinase activity
Biological Process (BP)
-
Cellular Component (CC)
-
Biological Imaging Method
time lapse microscopy, fluorescence microscopy, FRET, differences in fluorescence lifetime
X scale
0.994 micrometer/pixel, NA, 0.0176398 centimetre/pixel, 0.31 micrometer/pixel, 0.621 micrometer/pixel, 1.242 micrometer/pixel
Y scale
0.994 micrometer/pixel, NA, 0.0176398 centimetre/pixel, 0.31 micrometer/pixel, 0.621 micrometer/pixel, 1.242 micrometer/pixel
Z scale
NA, 3 micrometer/slice, 6 micrometer/slice, 1 micrometer/slice
T scale
122 sec per time interval, NA, 1 min per time interval, 57 sec per time interval, 62 sec per time interval, 120 sec per time interval, 60.47 sec per time interval, 59 sec per time interval, 142 sec per time interval, 125 sec per time interval, 60 sec per time interval, 1 sec per time interval, 58 sec per time interval, 124 sec per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Tetsuya Watabe, Kenta Terai, Kenta Sumiyama, Michiyuki Matsuda (2020) Booster, a Red-Shifted Genetically Encoded Forster Resonance Energy Transfer (FRET) Biosensor Compatible with Cyan Fluorescent Protein/Yellow Fluorescent Protein-Based FRET Biosensors and Blue Light-Responsive Optogenetic Tools., ACS sensors, Volume 5, Number 3, pp. 719-730

Published in 2020 Mar 27 (Electronic publication in Feb. 26, 2020, midnight )

(Abstract) Genetically encoded Forster resonance energy transfer (FRET)-based biosensors have been developed for the visualization of signaling molecule activities. Currently, most of them are comprised of cyan and yellow fluorescent proteins (CFP and YFP), precluding the use of multiple FRET biosensors within a single cell. Moreover, the FRET biosensors based on CFP and YFP are incompatible with the optogenetic tools that operate at blue light. To overcome these problems, here, we have developed FRET biosensors with red-shifted excitation and emission wavelengths. We chose mKOkappa and mKate2 as the favorable donor and acceptor pair by calculating the Forster distance. By optimizing the order of fluorescent proteins and modulatory domains of the FRET biosensors, we developed a FRET biosensor backbone named "Booster". The performance of the protein kinase A (PKA) biosensor based on the Booster backbone (Booster-PKA) was comparable to that of AKAR3EV, a previously developed FRET biosensor comprising CFP and YFP. For the proof of concept, we first showed simultaneous monitoring of activities of two protein kinases with Booster-PKA and ERK FRET biosensors based on CFP and YFP. Second, we showed monitoring of PKA activation by Beggiatoa photoactivated adenylyl cyclase, an optogenetic generator of cyclic AMP. Finally, we presented PKA activity in living tissues of transgenic mice expressing Booster-PKA. Collectively, the results demonstrate the effectiveness and versatility of Booster biosensors as an imaging tool in vitro and in vivo.
(MeSH Terms)

Contact
Kenta Terai , Graduate School of Medicine, Kyoto University , Department of Pathology and Biology of Diseases
Contributors


Dataset List of 180-Watabe-Biosensoractivity

#
Dataset ID
Kind
Size
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# 7211
Datast ID Fig1B_No1_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
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# 7212
Dataset Kind Image data
Dataset Size 73.4 KB
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# 7213
Datast ID Fig1B_No2_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
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# 7214
Dataset Kind Image data
Dataset Size 73.2 KB
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# 7215
Datast ID Fig1B_No3_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
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# 7216
Dataset Kind Image data
Dataset Size 73.2 KB
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# 7217
Datast ID Fig1B_No4_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7218
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7219
Datast ID Fig1B_No5_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
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# 7220
Dataset Kind Image data
Dataset Size 73.2 KB
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# 7221
Datast ID Fig1B_No6_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
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# 7222
Dataset Kind Image data
Dataset Size 73.2 KB
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# 7223
Datast ID Fig1B_No7_afterFSK
Dataset Kind Image data
Dataset Size 73.5 KB
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SSBD:OMERO
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# 7224
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7225
Datast ID Fig1B_No8_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7226
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7227
Datast ID Fig1B_No9_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7228
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7229
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7230
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7231
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7232
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7233
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7234
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7235
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7236
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7237
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7238
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7239
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7240
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7241
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7242
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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# 7243
Dataset Kind Image data
Dataset Size 51.0 KB
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SSBD:OMERO
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# 7244
Dataset Kind Image data
Dataset Size 46.7 KB
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# 7245
Dataset Kind Image data
Dataset Size 51.2 KB
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# 7246
Dataset Kind Image data
Dataset Size 46.7 KB
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SSBD:OMERO
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# 7247
Dataset Kind Image data
Dataset Size 46.2 MB
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SSBD:OMERO
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# 7248
Dataset Kind Image data
Dataset Size 46.8 KB
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SSBD:OMERO
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# 7249
Dataset Kind Image data
Dataset Size 50.3 KB
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SSBD:OMERO
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# 7250
Dataset Kind Image data
Dataset Size 1.0 MB
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SSBD:OMERO
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# 7251
Dataset Kind Image data
Dataset Size 1.0 MB
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SSBD:OMERO
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# 7252
Dataset Kind Image data
Dataset Size 1.0 MB
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SSBD:OMERO
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# 7253
Dataset Kind Image data
Dataset Size 1.0 MB
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# 7254
Dataset Kind Image data
Dataset Size 1.0 MB
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SSBD:OMERO
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# 7255
Dataset Kind Image data
Dataset Size 188.7 MB
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# 7256
Dataset Kind Image data
Dataset Size 188.7 MB
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# 7257
Dataset Kind Image data
Dataset Size 188.7 MB
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# 7258
Dataset Kind Image data
Dataset Size 188.7 MB
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# 7259
Dataset Kind Image data
Dataset Size 188.7 MB
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# 7260
Dataset Kind Image data
Dataset Size 794.5 KB
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# 7261
Dataset Kind Image data
Dataset Size 794.4 KB
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# 7262
Dataset Kind Image data
Dataset Size 794.2 KB
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# 7263
Dataset Kind Image data
Dataset Size 798.8 KB
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# 7264
Dataset Kind Image data
Dataset Size 798.8 KB
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# 7265
Dataset Kind Image data
Dataset Size 140.5 MB
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# 7266
Dataset Kind Image data
Dataset Size 140.5 MB
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# 7267
Dataset Kind Image data
Dataset Size 140.5 MB
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# 7268
Dataset Kind Image data
Dataset Size 140.5 MB
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# 7269
Dataset Kind Image data
Dataset Size 140.5 MB
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SSBD:OMERO
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# 7270
Dataset Kind Image data
Dataset Size 2.0 MB
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# 7271
Dataset Kind Image data
Dataset Size 2.0 MB
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# 7272
Dataset Kind Image data
Dataset Size 2.0 MB
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# 7273
Dataset Kind Image data
Dataset Size 2.0 MB
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SSBD:OMERO
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# 7274
Dataset Kind Image data
Dataset Size 2.0 MB
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# 7275
Dataset Kind Image data
Dataset Size 2.0 MB
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SSBD:OMERO
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# 7276
Dataset Kind Image data
Dataset Size 361.3 MB
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# 7277
Dataset Kind Image data
Dataset Size 361.3 MB
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# 7278
Dataset Kind Image data
Dataset Size 361.3 MB
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# 7279
Dataset Kind Image data
Dataset Size 361.3 MB
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# 7280
Dataset Kind Image data
Dataset Size 361.3 MB
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# 7281
Dataset Kind Image data
Dataset Size 361.3 MB
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# 7282
Dataset Kind Image data
Dataset Size 32.1 MB
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# 7283
Dataset Kind Image data
Dataset Size 32.1 MB
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# 7284
Dataset Kind Image data
Dataset Size 64.9 KB
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# 7285
Dataset Kind Image data
Dataset Size 65.2 KB
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# 7286
Dataset Kind Image data
Dataset Size 64.9 KB
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# 7287
Dataset Kind Image data
Dataset Size 64.9 KB
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# 7288
Dataset Kind Image data
Dataset Size 62.8 KB
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# 7289
Dataset Kind Image data
Dataset Size 62.9 KB
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SSBD:OMERO
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# 7290
Dataset Kind Image data
Dataset Size 62.9 KB
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SSBD:OMERO
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# 7291
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7292
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7293
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7294
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7295
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7296
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7297
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7298
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7299
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7300
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7301
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7302
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7303
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7304
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7305
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7306
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7307
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7308
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7309
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7310
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7311
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7312
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7313
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7314
Dataset Kind Image data
Dataset Size 497.6 KB
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# 7315
Dataset Kind Image data
Dataset Size 464.5 KB
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# 7316
Dataset Kind Image data
Dataset Size 468.7 KB
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# 7317
Dataset Kind Image data
Dataset Size 464.5 KB
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# 7318
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7319
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7320
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7321
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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# 7322
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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# 7323
Dataset Kind Image data
Dataset Size 51.4 KB
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# 7324
Dataset Kind Image data
Dataset Size 50.8 KB
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SSBD:OMERO
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# 7325
Dataset Kind Image data
Dataset Size 50.7 KB
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SSBD:OMERO
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