Detail of worm3_NaAsO2



Project
Title
BDML file for quantitative information about behavior of goa-1(sy192) worm in the presence of increasing cocentrations of NaAsO2
Description
NA
Release, Updated
2014-10-03,
2018-11-15
License
CC BY-NC-SA
Kind
Quantitative data based on Experiment
File Formats
Data size
13.7 MB

Organism
C. elegans ( NCBI:txid6239 )
Strain(s)
-
Cell Line
-

Datatype
behavior
Molecular Function (MF)
Biological Process (BP)
locomotion ( GO:0040011 )
Cellular Component (CC)
-
Biological Imaging Method
XYZ Scale
XY: 4.1 micrometer/pixel, Z: 0 micrometer/frame
T scale
0.207 second for each time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Summary of Methods
See details in Cronin et al. (2005) BMC Genetics, 6(5).
Related paper(s)

Christopher J Cronin, Jane E Mendel, Saleem Mukhtar, Young-Mee Kim, Robert C Stirbl, Jehoshua Bruck, Paul W Sternberg (2005) An automated system for measuring parameters of nematode sinusoidal movement., BMC genetics, Volume 6, pp. 5

Published in 2005 Feb 7 (Electronic publication in Feb. 7, 2005, midnight )

(Abstract) BACKGROUND: Nematode sinusoidal movement has been used as a phenotype in many studies of C. elegans development, behavior and physiology. A thorough understanding of the ways in which genes control these aspects of biology depends, in part, on the accuracy of phenotypic analysis. While worms that move poorly are relatively easy to describe, description of hyperactive movement and movement modulation presents more of a challenge. An enhanced capability to analyze all the complexities of nematode movement will thus help our understanding of how genes control behavior. RESULTS: We have developed a user-friendly system to analyze nematode movement in an automated and quantitative manner. In this system nematodes are automatically recognized and a computer-controlled microscope stage ensures that the nematode is kept within the camera field of view while video images from the camera are stored on videotape. In a second step, the images from the videotapes are processed to recognize the worm and to extract its changing position and posture over time. From this information, a variety of movement parameters are calculated. These parameters include the velocity of the worm's centroid, the velocity of the worm along its track, the extent and frequency of body bending, the amplitude and wavelength of the sinusoidal movement, and the propagation of the contraction wave along the body. The length of the worm is also determined and used to normalize the amplitude and wavelength measurements. To demonstrate the utility of this system, we report here a comparison of movement parameters for a small set of mutants affecting the Go/Gq mediated signaling network that controls acetylcholine release at the neuromuscular junction. The system allows comparison of distinct genotypes that affect movement similarly (activation of Gq-alpha versus loss of Go-alpha function), as well as of different mutant alleles at a single locus (null and dominant negative alleles of the goa-1 gene, which encodes Go-alpha). We also demonstrate the use of this system for analyzing the effects of toxic agents. Concentration-response curves for the toxicants arsenite and aldicarb, both of which affect motility, were determined for wild-type and several mutant strains, identifying P-glycoprotein mutants as not significantly more sensitive to either compound, while cat-4 mutants are more sensitive to arsenite but not aldicarb. CONCLUSIONS: Automated analysis of nematode movement facilitates a broad spectrum of experiments. Detailed genetic analysis of multiple alleles and of distinct genes in a regulatory network is now possible. These studies will facilitate quantitative modeling of C. elegans movement, as well as a comparison of gene function. Concentration-response curves will allow rigorous analysis of toxic agents as well as of pharmacological agents. This type of system thus represents a powerful analytical tool that can be readily coupled with the molecular genetics of nematodes.
(MeSH Terms)

Contact
Paul W. Sternberg , California Institute of Technology , HHMI and Division of Biology , Sternberg Laboratory
Contributors
Christopher J. Cronin, Jane E. Mendel, Saleem Mukhtar, Young- Mee Kim, Robert C. Stirbl, Jehoshua Bruck, Paul W. Sternberg

Local ID
worm3_NaAsO2
BDML ID
fabd2604-81af-4f80-81f9-f6f0ae57dfb2
BDML/BD5