Detail of drosophila_raw_20190424



Project
Title
BDML file for raw reconstruction of early Drosophila wild-type development
Description
NA
Release, Updated
2013-10-03,
2019-04-24
License
CC BY-NC-SA
Kind
Quantitative data based on Experiment
File Formats
Data size
885.7 MB

Organism
D. melanogaster ( NCBITaxon:7227 )
Strain(s)
-
Cell Line
-

Datatype
nuclear positions
Molecular Function (MF)
Biological Process (BP)
embryo development ( GO:0009790 )
Cellular Component (CC)
nucleus ( GO:0005634 )
Biological Imaging Method
XYZ Scale
XY: 0.37 micrometer/pixel, Z: 0.37micrometer/frame
T scale
3.0 minute for each time interval

Image Acquisition
Experiment type
TimeLapse
Microscope type
ConfocalMicroscope
Acquisition mode
Other
Contrast method
Other
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Summary of Methods
See details in Keller et al. (2010) Nat Methods, 7(8): 637-642.
Related paper(s)

Philipp J Keller, Annette D Schmidt, Anthony Santella, Khaled Khairy, Zhirong Bao, Joachim Wittbrodt, Ernst H K Stelzer (2010) Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy., Nature methods, Volume 7, Number 8, pp. 637-42

Published in 2010 Aug (Electronic publication in July 4, 2010, midnight )

(Abstract) Recording light-microscopy images of large, nontransparent specimens, such as developing multicellular organisms, is complicated by decreased contrast resulting from light scattering. Early zebrafish development can be captured by standard light-sheet microscopy, but new imaging strategies are required to obtain high-quality data of late development or of less transparent organisms. We combined digital scanned laser light-sheet fluorescence microscopy with incoherent structured-illumination microscopy (DSLM-SI) and created structured-illumination patterns with continuously adjustable frequencies. Our method discriminates the specimen-related scattered background from signal fluorescence, thereby removing out-of-focus light and optimizing the contrast of in-focus structures. DSLM-SI provides rapid control of the illumination pattern, exceptional imaging quality and high imaging speeds. We performed long-term imaging of zebrafish development for 58 h and fast multiple-view imaging of early Drosophila melanogaster development. We reconstructed cell positions over time from the Drosophila DSLM-SI data and created a fly digital embryo.
(MeSH Terms)

Contact
Philipp J. Keller , Molecular Biology Laboratory , Cell Biology and Biophysics Unit
Contributors
Philipp J Keller, Annette D Schmidt, Anthony Santella, Khaled Khairy, Zhirong Bao, Joachim Wittbrodt, Ernst H K Stelzer

Local ID
drosophila_raw.mat
BDML ID
None
BDML/BD5