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Detail of nuc_0.5_20

Project
44-Hihara-NucleosomeDyn
SSBD:Repository
ssbd-repos-000044
Title
BDML file for the result of the Monte Carlo computer simulation of nucleosome dynamics in EGFP-pentamers resembling "a dog on a leash" situation (parameters: 13 nm spheres representing EGFP-pentamers in 0.5 mM 10 nm spheres representing a nucleosome with 20 nm as maximum displacement from the initial position)
Description
NA
Release, Updated
2017-10-03,
2018-11-15
License
CC BY
Kind
Quantitative data based on Simulation
File Formats
Data size
58.4 MB
Organism
-
Strain(s)
-
Cell Line
-
Datatype
single molecule dynamics
Molecular Function (MF)
Biological Process (BP)
-
Cellular Component (CC)
nucleuosome ( GO:0000786 )
Biological Imaging Method
XYZ Scale
XY: 1 micrometer, Z: 1 micrometer
T scale
1 microsecond for each time interval
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Summary of Methods
See details in Hihara et al. (2012) Cell Reports, 2(6): 1645-1656.
Related paper(s)
Contact
Kazunari Kaizu , RIKEN , Quantitative Biology Center , Laboratory for Biochemical Simulation
Contributors
Saera Hihara, Chan-Gi Pack, Kazunari Kaizu, Tomomi Tani, Tomo Hanafusa, Tadasu Nozaki, Satoko Takemoto, Tomohiko Yoshimi, Hideo Yokota, Naoko Imamoto, Yasushi Sako, Masataka Kinjo,　Koichi Takahashi, Takeharu Nagai, Kazuhiro Maeshima
Local ID
nuc_0.5_20
BDML ID
936a7bff-164c-4506-9fa9-253727f7cd78
BDML/BD5
https://ssbd.riken.jp/data/44-Hihara-NucleosomeDyn/bdml/nuc_0.5_20_bdml3.0.zip (5.5 MB)
External Link
http://www.e-cell.org/ecell4/