377-Ichinose-RedAlgae

Project

Title
Beta-tubulin dynamics during cell cycles of red algae
Description
Live cell imaging by fluorescence microscopy is a useful tool for elucidating the localization and function of proteins and organelles in single cells. Especially, time-lapse analysis observing the same field sequentially can be used to observe cells of many organisms and analyze the dynamics of intracellular molecules. By single-cell analysis, it is possible to elucidate the characteristics and fluctuations of individual cells, which cannot be elucidated from the data obtained by averaging the characteristics of an ensemble of cells. The primitive red alga Cyanidioschyzon merolae has a very simple structure and is considered a useful model organism for studying the mechanism of organelle division, since the division is performed synchronously with the cell cycle. However, C. merolae does not have a rigid cell wall, and environmental changes such as low temperature or high pH cause morphological change and disruption easily. Therefore, morphological studies of C. merolae typically use fixed cells. In this study, The authors constructed a long-term time-lapse observation system to analyze the dynamics of proteins in living C. merolae cells. From the results, they elucidate the cell division process of single living cells, including the function of intracellular components.
License
CC BY
Released at
Oct. 20, 2025, midnight
Updated at
Funding
This study received funds from Grant-in-Aid for Exploratory Research and Grant-Aid for Scientific Research (B).
# of image datasets
1

Papers

Papers
Paper information: Ichinose TM, Iwane AH. Long-term live cell cycle imaging of single Cyanidioschyzon merolae cells. Protoplasma. 2021 May;258(3):651-660.,
Pubmed ID: 33580410,
PMCID: PMC8052221,
DOI: https://doi.org/10.1007/s00709-020-01592-z,
URL: https://pubmed.ncbi.nlm.nih.gov/33580410/

Contacts

Contacts
Atsuko H Iwane (Contact) , Laboratory for Cell Field Structure , RIKEN BDR
Takako M Ichinose (Imaging Contributor)

Biosamples

Organisms
Cyanidioschyzon merolae (NCBI:txid45157)
Strains
T1
Cells
red algae (Rhodophyta)
Cell lines

Ontologies

UBERON
Anatomical entities
GO: Biological processes
cell cycle (GO:0007049), cell division (GO:0051301) (GO:0051301)
GO: Cellular components
GO: Molecular functions
tubulin binding (GO:0015631) (GO:0015631)

Genetics

Gene names
Protein names
Tubulin beta chain (A0A125YTB7)
Genetic methods
deletion (EFO_0004014)
Protein tags
SuperfolderFP (FBbi:00000472)
Probes
Oligo Primer
Genotype

Treatments

Reagent or Compound
Concentration
Fold Dilution

Imaging Methods

Dimensions
1024x1024x1x3x155,
X scales
1 micrometer,
Y scales
1 micrometer,
Z scales
NA,
T scales
15 minutes,
Channels
3 channel,
Microscopy types
fluorescence microscopy (FBbi:00000246)
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Body
OLYMPUS FV3000
Model
Light source
Detector
Objective
USLSAPO 100XS (OLYMPUS)
Filter set
Dichroic

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Cyanidioschyzon merolae (NCBI:txid45157)
URA5.3 / Tubulin beta chain (A0A125YTB7)
1024x1024x1x3x155
0.97GB
zip