Title
KIF5C running on various states of microtubules
Description
Kinesin-1, the founding member of the kinesin superfamily of proteins, is known to use only a subset of microtubules for transport in living cells. This biased use of microtubules is proposed as the guidance cue for polarized transport in neurons, but the underlying mechanisms are still poorly understood. Here, we report that kinesin-1 binding changes the microtubule lattice and promotes further kinesin-1 binding. This high-affinity state requires the binding of kinesin-1 in the nucleotide- free state. Microtubules return to the initial low-affinity state by washing out the binding kinesin-1 or by the binding of non-hydrolyzable ATP analogue AMPPNP to kinesin-1. X-ray fiber diffraction, fluorescence speckle microscopy, and second- harmonic generation microscopy, as well as cryo-EM, collectively demonstrated that the binding of nucleotide-free kinesin-1 to GDP microtubules changes the conformation of the GDP microtubule to a conformation resembling the GTP microtubule.
Released at
Oct. 20, 2025, midnight
Funding
This work was supported by the Ministry of Education, Cul- ture, Sports, Science and Technology through a Grant-in-Aid for Specially Promoted Research (grant 23000013 to N. Hi- rokawa) and Grant-in-Aid for Scientific Research (KAKENHI grant 16H06372 to N. Hirokawa; grants 16H05119, 15H01334, 26115721, 26650069, and 25293046 to Y. Okada; grants 15H01656 and 17H05897 to H. Shigematsu; and grant 15K08168 to R. Nitta), the Uehara Memorial Foundation (Y. Okada), the Takeda Science Foundation (Y. Okada and R. Nitta), the Mochida Memorial Foun- dation for Medical and Pharmaceutical Research (R. Nitta), the RIKEN Special Postdoctoral Researchers Program (T. Shima), the All RIKEN Research Project on Single Cell (Y. Okada), and the RIKEN Pioneering Project on Dynamic Structural Biology (Y. Okada, H. Shigematsu, and M. Shirouzu).
Papers
Paper information: Shima T, Morikawa M, Kaneshiro J, Kambara T, Kamimura S, Yagi T, Iwamoto H, Uemura S, Shigematsu H, Shirouzu M, Ichimura T, Watanabe TM, Nitta R, Okada Y, Hirokawa N. Kinesin-binding-triggered conformation switching of microtubules contributes to polarized transport. J Cell Biol. 2018 Dec 3;217(12):4164-4183.,
Pubmed ID:
30297389,
PMCID:
PMC6279379,
DOI:
https://doi.org/10.1083/jcb.201711178,
URL:
https://pubmed.ncbi.nlm.nih.gov/30297389/
Contacts
Yasushi
Okada
(Imaging Contributor)
, Laboratory for Cell Polarity Regulation
, RIKEN BDR
Nobutaka
Hirokawa
(Contact)
, Department of Cell Biology and Anatomy, Graduate School of Medicine
, The University of Tokyo
Tomohiro
Shima
(Imaging Contributor)
Sotaro
Uemura
(Imaging Contributor)
UBERON
Reagent or Compound
Concentration
Fold Dilution
Dimensions
1475x1679x1x1x17,
1475x1679x1x1x26,
1475x1679x1x1x21,
512x512x1x2x71,
512x512x1x1x1000,
X scales
0.017 nanometer^{-1}/pixel,
60 nanometer/pixel,
Y scales
0.017 nanometer^{-1}/pixel,
60 nanometer/pixel,
T scales
0.1 seconds per time interval,
15 seconds per time interval,
2 seconds per time interval,
5 seconds per time interval,
Channels
2 channel,
1 channel,
Contrast enhancing methods
Resolution enhancing methods
Sample preparation methods
Body
Olympus-Evident IX83
Light source
Coherent, Obis LX 488
Detector
iXon3 EM CCD camera
Objective
UP- lanSApo, NA 1.40, oil; Olympus
Light source
A synchrotron radiation x-ray beam at BL45XU beamline of SPring-8
Detector
Pilatus 300K-W detector system
Body
Olympus-Evident IX83
Light source
Coherent, Obis LX 532 (for microtubule) and Cooherent, CUBE 640 (for KIF5C)
Detector
iXon3 EM CCD camera
Objective
UP- lanSApo, NA 1.40, oil; Olympus
Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
()
Kif5c
/ Kinesin heavy chain isoform 5C (
P28738)
512x512x1x1x1000
531MB
()
Kif5c
/ Kinesin heavy chain isoform 5C (
P28738)
/ Tubulin alpha-1A chain, Tubulin beta chain (
P02550, P02554)
512x512x1x1x1000
500MB
()
1475x1679x1x1x26
257MB
()
1475x1679x1x1x21
208MB
()
1475x1679x1x1x17
198MB