Dataset Fig4e_bilaminoid_without-nTB_3D

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Project

Project
379-Okubo-bilaminoid
Title
3D images of bilaminar organoid generated from co-culture of human pluripotent stem cells (hPSC) and hPSC-derived hypoblast-like cells
Description
Recently, several studies using cultures of human embryos together with single-cell RNA-seq analyses have revealed differences between humans and mice, necessitating the study of human embryos. Despite the importance of human embryology, ethical and legal restrictions have limited post-implantation-stage studies. Thus, recent efforts have focused on developing in vitro self-organizing models using human stem cells. In this paper, the authors report genetic and non-genetic approaches to generate authentic hypoblast cells (naive hPSC-derived hypoblast-like cells (nHyCs))-known to give rise to one of the two extraembryonic tissues essential for embryonic development-from naive human pluripotent stem cells (hPSCs). Their nHyCs spontaneously assemble with naive hPSCs to form a three-dimensional bilaminar structure (bilaminoids) with a pro-amniotic-like cavity. In the presence of additional naive hPSC-derived analogues of the second extraembryonic tissue, the trophectoderm, the efficiency of bilaminoid formation increases from 20% to 40%, and the epiblast within the bilaminoids continues to develop in response to trophectoderm-secreted IL-6. Furthermore, they show that bilaminoids robustly recapitulate the patterning of the anterior-posterior axis and the formation of cells reflecting the pregastrula stage, the emergence of which can be shaped by genetically manipulating the DKK1/OTX2 hypoblast-like domain.
License
CC BY
Funding
This work was supported by MEXT KAKENHI (grant numbers: JP16H02465, JP15H02360, JP20H05361, JP20H05762, JP21K19189, JP23K18340) and AMED (grant numbers: JP21bm0704035, JP21bm0104001, JP21gm1310011, JP23bm1323001) to Y.T.; MEXT KAKENHI (grant number: JP19H03418) and the JST FOREST Program (grant number: JPMJFR206C), JST CREST (grant number: JPMJCR2023) and AMED (grant numbers: JP17gm1110004, JP19gm1310002, JP19bm0704032, JP21bm0104001, JP21gm1310011) to T.Y.; MEXT KAKENHI (grant numbers: JP15H02360, JP19H05759) to E.S.; AMED (grant number: JP22bm1004002) to H.N.; the Takeda Science Foundation to Y.T.; the Naito Foundation to Y.T.; the Mochida Memorial Foundation for Medical and Pharmaceutical Research to Y.T.; and the Astellas Foundation for Research on Metabolic Disorders to Y.T.

Dataset

Title
3D-rendered image of bilaminoid on day 6 in the absence of nTB
Description
3D-renderd image of bilaminoid generated spontaneously by the mixture of naive hPSCs (human pluripotent stem cells) and nHyCs (naive hPSC-derived hypoblast-like cells expressing GFP) on day 6. The bilaminoid was generated in the absence of nTB (trophectoderm/trophoblast-like cells). After fixation, the bilaminoid was stained for PAR6, GFP, and DAPI.
License
CC BY
Submitted at
None
Released at
None
Updated at

Biosamples

Description
Bilaminar embryo-like aggregates (bilaminoids) generated by the mixture of naive hPSCs (human pluripotent stem cells) and nHyCs (naive hPSC-derived hypoblast-like cells).
Organisms
Homo sapiens (NCBI:txid9606)
Strains
Cells
pluripotent stem cell (CL_0002248)
Cell lines
Intrinsic variables
Extrinsic variables
Doxycycline was applied to the culture to induce the overexpression of GATA6 in naive hPSC-derived hypoblast-like cells

Ontologies

UBERON
pluripotent stem cell (CL_0002248)
Anatomical entities
Gene ontology: Biological processes
embryo development (GO:0009790)
Gene ontology: Cellular components
Gene ontology: Molecular functions

Genetics

Gene names
Protein names
Partitioning defective 6 homolog alpha (Q9NPB7)
Genetic methods
transfection (EFO_0000726)
Protein tags
GFP (FBbi:00000437)
Probes
DAPI (FBbi:00000056)
Oligo Primer
Genotype

Treatments

Reagent or Compound
Concentrations
FoldDilution

Imaging Methods

Dimensions
X scales
Y scales
Z scales
T scales
Channels
Microscopy types
(NA)
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Image parameters
Sample preparation methods

Instruments

Body
Model
Light source
Detector
Objective
Filter set
Dichroic