SSBD:database

8-Bashar-MouseEmbryo

OMERO gallery,
OMERO index

Project

Title
Description
License
CC BY-NC-SA
Released at
Oct. 3, 2014, midnight
Updated at
Funding
# of image datasets
2

Papers

Papers
Paper information: Md Khayrul Bashar, Koji Komatsu, Toshihiko Fujimori, Tetsuya J Kobayashi (2012) Automatic extraction of nuclei centroids of mouse embryonic cells from fluorescence microscopy images., PloS one, Volume 7, Number 5, pp. e35550,
Pubmed ID: 22590505,
PMCID: 3348125,
DOI: https://doi.org/10.1371/journal.pone.0035550,

Contacts

Contacts
Md. Bashar (Contact) , Institute of Industrial Science , The University of Tokyo
Md. Bashar (Image dataset contributor)
Koji Komatsu (Image dataset contributor)
Toshihiko Fujimori (Image dataset contributor)
Tetsuya Kobayashi (Image dataset contributor)

Biosamples

Organisms
Mus musculus (NCBI:txid10090)
Strains
NA
Cells
Cell lines

Anatomical information

UBERON
Anatomical entities

Gene ontology

GO: Biological processes
embryo development (GO:0009790)
GO: Cellular components
nucleus (GO:0005634)
GO: Molecular functions

Molecular biological information

Gene names
Protein names
Genetic methods
Protein tags
Probes
Oligo Primer
Genotype

Reagent or Compound

Reagent or Compound
Concentration
Fold Dilution

Imaging information

Dimensions
X scales
,
Y scales
,
Z scales
,
T scales
10 minute for each time interval,
Channels
,

Biological Imaging Methods Ontology

Microscopy types
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
088044_L1
Mus musculus (NCBI:txid10090)
164627520
Gallery, Index
zip
088044_L1
Mus musculus (NCBI:txid10090)
1388748
zip