SSBD:database

5-Keller-FishEmbryo

Project

Title
Description
License
CC BY-NC-SA
Released at
Oct. 3, 2013, midnight
Updated at
Funding
# of image datasets
7

Papers

Papers
Paper information: Philipp J Keller, Annette D Schmidt, Joachim Wittbrodt, Ernst H K Stelzer (2008) Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy., Science (New York, N.Y.), Volume 322, Number 5904, pp. 1065-9,
Pubmed ID: 18845710,
DOI: https://doi.org/10.1126/science.1162493,

Contacts

Contacts
Philipp Keller (Contact) , Cell Biology and Biophysics Unit , European Molecular Biology Laboratory
Philipp Keller (Image dataset contributor)
Annette Schmidt (Image dataset contributor)
Joachim Wittbrodt (Image dataset contributor)
Ernst Stelzer (Image dataset contributor)

Biosamples

Organisms
Danio rerio (NCBI:txid7955)
Strains
NA
Cells
Cell lines

Anatomical information

UBERON
Anatomical entities

Gene ontology

GO: Biological processes
embryo development (GO:0009790)
GO: Cellular components
nucleus (GO:0005634)
GO: Molecular functions

Molecular biological information

Gene names
Protein names
Genetic methods
Protein tags
Probes
Oligo Primer
Genotype

Reagent or Compound

Reagent or Compound
Concentration
Fold Dilution

Imaging information

Dimensions
X scales
,
Y scales
,
Z scales
,
T scales
90 second for each time interval,
Channels
,

Biological Imaging Methods Ontology

Microscopy types
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
zebrafish_animal_a
Danio rerio (NCBI:txid7955)
8106431077
zip
zebrafish_animal_b
Danio rerio (NCBI:txid7955)
9847575885
zip
zebrafish_animal_c
Danio rerio (NCBI:txid7955)
3199668605
zip
zebrafish_dorsal
Danio rerio (NCBI:txid7955)
5225693089
zip
zebrafish_in_toto_mzoep
Danio rerio (NCBI:txid7955)
9954180767
zip
zebrafish_in_toto_wt
Danio rerio (NCBI:txid7955)
8963342085
zip
zebrafish_ventral
Danio rerio (NCBI:txid7955)
6478942135
zip