SSBD:database

409-Ichimura-AMATERAS

OMERO gallery,
OMERO index

Project

Title
Ultra-large FOV imaging by AMATERAS-2
Description
License
CC BY
Released at
Nov. 26, 2025, midnight
Updated at
Funding
# of image datasets
7

Papers

Papers
Paper information: Taro Ichimura, Taishi Kakizuka, Yoshitsugu Taniguchi, Satoshi Ejima, Yuki Sato, Keiko Itano, Kaoru Seiriki, Hitoshi Hashimoto, Ko Sugawara, Hiroya Itoga, Shuichi Onami, Takeharu Nagai (2025) Volumetric trans-scale imaging of massive quantity of heterogeneous cell populations in centimeter-wide tissue and embryo., eLife, Volume 13,
Pubmed ID: 39899352,
PMCID: 11790249,
DOI: https://doi.org/10.7554/eLife.93633,

Contacts

Contacts
Taro Ichimura (Contact) , Institute for Open and Transdisciplinary Research Initiatives , Osaka University
Takeharu Nagai (Contact) , Institute for Open and Transdisciplinary Research Initiatives , Osaka University
Taishi Kakizuka (Image dataset contributor)
Yoshitsugu Taniguchi (Image dataset contributor)
Satoshi Ejima (Image dataset contributor)
Yuki Sato (Image dataset contributor)
Kaoru Seiriki (Image dataset contributor)
Hitoshi Hashimoto (Image dataset contributor)

Biosamples

Organisms
Homo sapiens (NCBI:txid9606)
Mus musculus (NCBI:txid10090)
Coturnix japonica (NCBI:txid93934)
Strains
Tg (tie1:H2B-eYFP)
C57BL/6J
NA
Cells
Cell lines
hiPSC line 201B7
NA

Anatomical information

UBERON
Anatomical entities

Gene ontology

GO: Biological processes
GO: Cellular components
GO: Molecular functions

Molecular biological information

Gene names
Protein names
Genetic methods
Protein tags
Probes
Oligo Primer
Genotype

Reagent or Compound

Reagent or Compound
Concentration
Fold Dilution

Imaging information

Dimensions
X scales
0.75 micrometer, 1.1 micrometer, 0.55 micrometer,
Y scales
0.75 micrometer, 1.1 micrometer, 0.55 micrometer,
Z scales
12 micrometer, 4 micrometer, NA,
T scales
7.5 minutes, NA,
Channels
,

Biological Imaging Methods Ontology

Microscopy types
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Fig2CD_CardiacSheet
Homo sapiens (NCBI:txid9606)
246328355
Gallery, Index
zip
Fig2E_CardiacSheet
Homo sapiens (NCBI:txid9606)
121763721
Gallery, Index
zip
Fig4_Hoechst
Homo sapiens (NCBI:txid9606)
37441033293
Gallery, Index
zip
Fig4_Troponin
Homo sapiens (NCBI:txid9606)
37441033444
Gallery, Index
zip
Fig5_Brain_2fold
Mus musculus (NCBI:txid10090)
46054446548
Gallery, Index
zip
Fig5_Brain_4fold
Mus musculus (NCBI:txid10090)
47516491820
Gallery, Index
zip
Fig6_QuailEmbyo
Coturnix japonica (NCBI:txid93934)
511640097866
Gallery, Index
zip