SSBD:database

121-Inoue-SingleCellDyn

OMERO gallery,
OMERO index

Project

Title
Timelapse images and quantification of signal activity of differentiated C2C12 cells expressing Eevee-S6K and mitAT1.03 in individual myotube
Description
License
CC BY-NC-SA
Released at
Nov. 20, 2019, midnight
Updated at
Funding
# of image datasets
29

Papers

Papers
Paper information: Haruki Inoue, Katsuyuki Kunida, Naoki Matsuda, Daisuke Hoshino, Takumi Wada, Hiromi Imamura, Hiroyuki Noji, Shinya Kuroda (2018) Automatic Quantitative Segmentation of Myotubes Reveals Single-cell Dynamics of S6 Kinase Activation., Cell structure and function, Volume 43, Number 2, pp. 153-169,
Pubmed ID: 30047513,
DOI: https://doi.org/10.1247/csf.18012,

Contacts

Contacts
Shinya Kurodoa (Contact) , Department of Computational Biology and Medical Sciences , Graduate School of Frontier Sciences
Haruki Inoue (Image dataset contributor)
Katsuyuki Kunida (Image dataset contributor)
Naoki Matsuda (Image dataset contributor)
Daisuke Hoshino (Image dataset contributor)
Takumi Wada (Image dataset contributor)
Hiromi Imamura (Image dataset contributor)
Hiroyuki Noji (Image dataset contributor)
Shinya Kuroda (Image dataset contributor)

Biosamples

Organisms
Mus musculus (NCBI:txid10090)
Strains
C2C12
Cells
Cell lines

Anatomical information

UBERON
Anatomical entities

Gene ontology

GO: Biological processes
myotube differentiation (GO:0014902)
GO: Cellular components
GO: Molecular functions

Molecular biological information

Gene names
Protein names
Genetic methods
Protein tags
Probes
Oligo Primer
Genotype

Reagent or Compound

Reagent or Compound
Concentration
Fold Dilution

Imaging information

Dimensions
X scales
,
Y scales
,
Z scales
,
T scales
5 minutes for each time interval,
Channels
,

Biological Imaging Methods Ontology

Microscopy types
Detection methods
Visualization methods
Illumination methods
Sources of contrast
Contrast enhancing methods
Resolution enhancing methods
Imaged parameters
Sample preparation methods

Instruments

Datasets

Dataset name
Organism
Gene / Protein
Dimensions
File size
SSBD:OMERO
Download
Fig1_7_170214_nonstim_S6K_w2CFP
Mus musculus (NCBI:txid10090)
4661426340
Gallery, Index
zip
Fig1_7_170214_nonstim_S6K_w3FRET_YFP
Mus musculus (NCBI:txid10090)
4661510800
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_ratio_s1
Mus musculus (NCBI:txid10090)
540887924
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_ratio_s2
Mus musculus (NCBI:txid10090)
540888140
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_ratio_s3
Mus musculus (NCBI:txid10090)
540888140
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_ratio_s4
Mus musculus (NCBI:txid10090)
540888080
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_ratio_s5
Mus musculus (NCBI:txid10090)
540887984
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_ratio_s6
Mus musculus (NCBI:txid10090)
540888140
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_ratio_s7
Mus musculus (NCBI:txid10090)
540888140
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_ratio_s8
Mus musculus (NCBI:txid10090)
540887510
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w2CFP_s1
Mus musculus (NCBI:txid10090)
361757133
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w2CFP_s2
Mus musculus (NCBI:txid10090)
361757271
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w2CFP_s3
Mus musculus (NCBI:txid10090)
361757565
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w2CFP_s4
Mus musculus (NCBI:txid10090)
361757677
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w2CFP_s5
Mus musculus (NCBI:txid10090)
361757673
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w2CFP_s6
Mus musculus (NCBI:txid10090)
361757951
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w2CFP_s7
Mus musculus (NCBI:txid10090)
361757925
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w2CFP_s8
Mus musculus (NCBI:txid10090)
361758211
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w3FRET_YFP_s1
Mus musculus (NCBI:txid10090)
361763708
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w3FRET_YFP_s2
Mus musculus (NCBI:txid10090)
361763812
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w3FRET_YFP_s3
Mus musculus (NCBI:txid10090)
361764122
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w3FRET_YFP_s4
Mus musculus (NCBI:txid10090)
361764196
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w3FRET_YFP_s5
Mus musculus (NCBI:txid10090)
361764226
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w3FRET_YFP_s6
Mus musculus (NCBI:txid10090)
361764490
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w3FRET_YFP_s7
Mus musculus (NCBI:txid10090)
361764498
Gallery, Index
zip
Fig11_Eevee_S6K_GMM_w3FRET_YFP_s8
Mus musculus (NCBI:txid10090)
361764774
Gallery, Index
zip
Fig11_mitAT1.03_GMM_ratio
Mus musculus (NCBI:txid10090)
189926984
Gallery, Index
zip
Fig11_mitAT1.03_GMM_w1CFP
Mus musculus (NCBI:txid10090)
126947132
Gallery, Index
zip
Fig11_mitAT1.03_GMM_w2YFP
Mus musculus (NCBI:txid10090)
126949257
Gallery, Index
zip