Summary of ssbd-repos-000157

Name
URL
DOI

Title
Raw data of an article “Multiple types of navigational information are diffusely and independently encoded in the population activities of the dentate gyrus neurons” (Murano et al., 2020)
Description

The dentate gyrus (DG) plays critical roles in cognitive functions such as learning, memory, and spatial coding, and its dysfunction is implicated in various neuropsychiatric disorders. However, it remains largely unknown how information is represented in this region. Here, we recorded neuronal activity in the DG using Ca2+ imaging in freely moving mice and analysed this activity using machine learning. Although each individual neuron was weakly and diversely tuned to multiple information types, the activity patterns of populations of DG neurons enabled us to successfully decode position, speed, and motion direction in an open field as well as current and future location in a T-maze. In αCaMKII heterozygous knockout mice, an animal model of neuropsychiatric disorders, including intellectual disability and bipolar disorder, the decoding accuracy of position in the open field and future location in the T-maze were selectively reduced. These results suggest that multiple types of information are diffusely and independently distributed in DG neurons.

Submited Date
2020-06-03
Release Date
2020-06-23
Updated Date
-
License
Funding information
-
File formats
Raw and processed calcium fluorescence data in the original format of nVista system (inscopix; *.isxd files, paired with *.isxp metafile), count of active cell population (*.xlsx), extracted calcium signal traces of each neuron (*.csv), and cell countour images (*.tiff) are registered. The [*.isxd] data stored in a folder (*_data) are linked to a metafile (*.isxp) located in their parent folder, and these files can be opened with “Inscopix Data Processing Software‘’ available from inscopix (https://www.inscopix.com/). Processed datasets and codes used for the decoding analyses are available at GitHub (https://github.com/tmurano).
Data size
4.9 TB

Organism
Mus musculus
Strain
C57BL/6J
Cell Line
NA
Genes
-
Proteins
-

GO Molecular Function (MF)
The mutant grpoup of the mice which we studied have heterozygous knockout of a gene coding calcium/calmodulin dependent protein kinase II alpha (CaMKIIa) protein, whose function is involved in synaptic plasticity, neurotransmitter release and long-term potentiation. These mutant mice is an animal model of neuropsychiatric disorders, including intellectual disability and bipolar disorder.
GO Biological Process (BP)
In the heterozygous CaMKIIa knockout mice, Calbindin, a marker of mature neurons in the dentate gyrus, is largely reduced. The neurons of these mutants had multiple features of normal immature neurons, at molecular, morphological and electrophysiological levels.
GO Cellular Component (CC)
NA
Study Type
in vivo, calcium imaging, navigational information, spatial coding, dematuration
Imaging Methods
in-vivo, freely behaving, epi-fluorescent calcium imaging, miniature microscope

Method Summary

See details in Murano T, Nakajima R, Nakao A, Hirata N, Amemori S, Murakami A, Kamitani Y, Yamamoto J, Miyakawa T. Multiple types of navigational information are independently encoded in the population activities of the dentate gyrus neurons. Proc Natl Acad Sci U S A. 2022 Aug 9;119(32):e2106830119. doi: 10.1073/pnas.2106830119. Epub 2022 Aug 5. PMID: 35930667.

(See details in Murano T, et. al. (2020) BioRxiv. https://doi.org/10.1101/2020.06.09.141572 )

Related paper(s)

Tomoyuki Murano, Ryuichi Nakajima, Akito Nakao, Nao Hirata, Satoko Amemori, Akira Murakami, Yukiyasu Kamitani, Jun Yamamoto, Tsuyoshi Miyakawa (2022) Multiple types of navigational information are independently encoded in the population activities of the dentate gyrus neurons., Proceedings of the National Academy of Sciences of the United States of America, Volume 119, Number 32, pp. e2106830119

Published in 2022 Aug 9 (Electronic publication in Aug. 5, 2022, midnight )

(Abstract) The dentate gyrus (DG) plays critical roles in cognitive functions, such as learning, memory, and spatial coding, and its dysfunction is implicated in various neuropsychiatric disorders. However, it remains largely unknown how information is represented in this region. Here, we recorded neuronal activity in the DG using Ca(2+) imaging in freely moving mice and analyzed this activity using machine learning. The activity patterns of populations of DG neurons enabled us to successfully decode position, speed, and motion direction in an open field, as well as current and future location in a T-maze, and each individual neuron was diversely and independently tuned to these multiple information types. Our data also showed that each type of information is unevenly distributed in groups of DG neurons, and different types of information are independently encoded in overlapping, but different, populations of neurons. In alpha-calcium/calmodulin-dependent kinase II (alphaCaMKII) heterozygous knockout mice, which present deficits in spatial remote and working memory, the decoding accuracy of position in the open field and future location in the T-maze were selectively reduced. These results suggest that multiple types of information are independently distributed in DG neurons.
(MeSH Terms)
Related paper(s)

Murano, Tomoyuki, Nakajima, Ryuichi, Nakao, Akito, Hirata, Nao, Amemori, Satoko, Murakami, Akira, Kamitani, Yukiyasu, Yamamoto, Jun, Miyakawa, Tsuyoshi (2020/01/01), Multiple types of navigational information are independently encoded in the population activities of the dentate gyrus neurons, bioRxiv, 2020.06.09.141572

Published in 2020/01/01

(Abstract) The dentate gyrus (DG) plays critical roles in cognitive functions such as learning, memory, and spatial coding, and its dysfunction is implicated in various neuropsychiatric disorders. However, it remains largely unknown how information is represented in this region. Here, we recorded neuronal activity in the DG using Ca2+ imaging in freely moving mice and analysed this activity using machine learning. The activity patterns of populations of DG neurons enabled us to successfully decode position, speed, and motion direction in an open field as well as current and future location in a T-maze, and each individual neuron was diversely and independently tuned to these multiple information types. In αCaMKII heterozygous knockout mice, which present deficits in spatial remote and working memory, the decoding accuracy of position in the open field and future location in the T-maze were selectively reduced. These results suggest that multiple types of information are independently distributed in DG neurons.Competing Interest StatementThe authors have declared no competing interest.

Contact(s)
Tomoyuki Murao, Ryuichi Nakajima, Tsuyoshi Miyakawa
Organization(s)
Fujita Health University , Institute for Comprehensive Medical Science , Division of Systems Medical Science, Laboratory for Developmental Dynamics
Image Data Contributors
Ryuichi Nakajima
Quantitative Data Contributors
Tomoyuki Murano, Ryuichi Nakajima

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