Summary of ssbd-repos-0005

SSBD:database
URL

Name
ssbd-repos-0005 (5-Keller-FishEmbryo)
URL
DOI
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Title
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Description
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Submited Date
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Release Date
2013-10-03
Updated Date
2018-11-15
License
Funding information
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File formats
Data size
48.2 GB

Organism
D. rerio
Strain
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Cell Line
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Genes
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Proteins
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GO Molecular Function (MF)
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GO Biological Process (BP)
embryo development
GO Cellular Component (CC)
nucleus
Study Type
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Imaging Methods
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Method Summary
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Related paper(s)

Philipp J Keller, Annette D Schmidt, Joachim Wittbrodt, Ernst H K Stelzer (2008) Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy., Science (New York, N.Y.), Volume 322, Number 5904, pp. 1065-9

Published in 2008 Nov 14 (Electronic publication in Oct. 9, 2008, midnight )

(Abstract) A long-standing goal of biology is to map the behavior of all cells during vertebrate embryogenesis. We developed digital scanned laser light sheet fluorescence microscopy and recorded nuclei localization and movement in entire wild-type and mutant zebrafish embryos over the first 24 hours of development. Multiview in vivo imaging at 1.5 billion voxels per minute provides "digital embryos," that is, comprehensive databases of cell positions, divisions, and migratory tracks. Our analysis of global cell division patterns reveals a maternally defined initial morphodynamic symmetry break, which identifies the embryonic body axis. We further derive a model of germ layer formation and show that the mesendoderm forms from one-third of the embryo's cells in a single event. Our digital embryos, with 55 million nucleus entries, are provided as a resource.
(MeSH Terms)

Contact(s)
Philipp J. Keller
Organization(s)
European Molecular Biology Laboratory , Cell Biology and Biophysics Unit
Image Data Contributors
Quantitative Data Contributors

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